Difference between revisions of "Ajvree Week 10"
From LMU BioDB 2013
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*information needed: a reference genome for species/main reference strand, usually the earliest date | *information needed: a reference genome for species/main reference strand, usually the earliest date | ||
| + | ===Search Results:=== | ||
| + | ==Article 1:== | ||
| + | *Searched Web of Science for '''transcriptional profiling Streptococcus pneumoniae''' under topic, got 38 results. | ||
| + | *Found article titled : '''Gene expression profile of early in vitro biofilms of Streptococcus pneumoniae''' (Mukesh Kumar Yadav et al., 2012) | ||
| + | *Used Google Scholar to search for full article | ||
| + | *Article PDF involves comparing microarray data of S. pneumoniae biofilm to planktonic cells. 21 biological microarray replicates were done, with the control being the planktonic cells. | ||
| + | *Searched article for location of microarray data, located here: '''http://www.ncbi.nlm.nih.gov/geo''' under | ||
| + | accession number '''GSE34751''' | ||
| + | |||
| + | *'''PDF:''' [[Media:Geneexpressionarticle1.pdf|S. pneumoniae Article 1]] | ||
| + | *Full Citation: <br> | ||
| + | Yadav, M. K., Kwon, S. K., Cho, C. G., Park, S.-W., Chae, S.-W. and Song, J.-J. (2012), Gene expression profile of early in vitro biofilms of Streptococcus pneumoniae. Microbiology and Immunology, 56: 621–629. | ||
| + | *Based on this report and other titles listed while searching, a lot of research regarding vaccines against the pathogenic strain is popular, in addition to research on how to prevent the bacteria from growing. | ||
| + | ==Article 2:== | ||
| + | *Found second article using references from first article, looked for key words in title about transcription activity/microarray data | ||
| + | *link to article: [http://jb.asm.org/content/185/1/359.full] | ||
| + | *Full Citation: | ||
| + | Ng, WL, Kazmierczak, KM Robertson, GT, et al., 2003. ''Transcriptional regulation and signature patterns revealed by microarray analyses of Streptococcus pneumoniae R6 challenged with sublethal concentrations of translation inhibitors.'' Journal of Bacteriology. Volume 185, Issue 1, Pages 359-370. | ||
| + | *In this experiment, cell cultures were exposed to 4 different translation inhibitors to determine the effect on the transcript activity. The control used was a 1% DMSO culture that contained no antibiotics. There were 3 replicates done of the microarray analysis, and Northern blot analysis was also used. | ||
| + | ==Links== | ||
| + | {{Team ATK}} | ||
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[[Category:Journal Entry]] | [[Category:Journal Entry]] | ||
Latest revision as of 18:15, 18 November 2013
10/29/13 Lecture Notes
- Library homepage>Libguides>link to BIO 367>databases
- Open access: physics(peer sharing) and life sciences (availability of granted research)
- PMC Journal: information designated by govt to be available to all
- Now authors pay journal to have information published, makes open access controversial
- http://libguides.lmu.edu/BIOL367
- Google scholar ranks articles, dates will be all over the place, etc.
- MeSH terms: medical subheading
- information needed: a reference genome for species/main reference strand, usually the earliest date
Contents |
[edit] Search Results:
[edit] Article 1:
- Searched Web of Science for transcriptional profiling Streptococcus pneumoniae under topic, got 38 results.
- Found article titled : Gene expression profile of early in vitro biofilms of Streptococcus pneumoniae (Mukesh Kumar Yadav et al., 2012)
- Used Google Scholar to search for full article
- Article PDF involves comparing microarray data of S. pneumoniae biofilm to planktonic cells. 21 biological microarray replicates were done, with the control being the planktonic cells.
- Searched article for location of microarray data, located here: http://www.ncbi.nlm.nih.gov/geo under
accession number GSE34751
- PDF: S. pneumoniae Article 1
- Full Citation:
Yadav, M. K., Kwon, S. K., Cho, C. G., Park, S.-W., Chae, S.-W. and Song, J.-J. (2012), Gene expression profile of early in vitro biofilms of Streptococcus pneumoniae. Microbiology and Immunology, 56: 621–629.
- Based on this report and other titles listed while searching, a lot of research regarding vaccines against the pathogenic strain is popular, in addition to research on how to prevent the bacteria from growing.
[edit] Article 2:
- Found second article using references from first article, looked for key words in title about transcription activity/microarray data
- link to article: [1]
- Full Citation:
Ng, WL, Kazmierczak, KM Robertson, GT, et al., 2003. Transcriptional regulation and signature patterns revealed by microarray analyses of Streptococcus pneumoniae R6 challenged with sublethal concentrations of translation inhibitors. Journal of Bacteriology. Volume 185, Issue 1, Pages 359-370.
- In this experiment, cell cultures were exposed to 4 different translation inhibitors to determine the effect on the transcript activity. The control used was a 1% DMSO culture that contained no antibiotics. There were 3 replicates done of the microarray analysis, and Northern blot analysis was also used.
[edit] Links
| Alina's User Page | Kevin's User Page | Tauras's User Page |
| Biological Databases Class Page | Gene Database Project | Gene Database Project Report Guidelines |
- Import Export Cycle 1: tATK Export One: TIGR4 Testing Report
- Import Export Cycle 2: tATK E2: TIGR4 Testing Report
- Import Export Cycle 3: tATK E3: TIGR4 Testing Report
- Import Export Cycle 4: tATK E4: TIGR4 Testing Report
| Project Roles: | Project Manager | Coder | GenMAPP User | Quality Assurance |
