Difference between revisions of "Streptococcus pneumoniae"
From LMU BioDB 2013
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:Web Link: [http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-26976/?query=Streptococcus+pneumoniae Biofilm paper] | :Web Link: [http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-26976/?query=Streptococcus+pneumoniae Biofilm paper] | ||
:PDF: [[Media:Biofilms_paper.pdf]] | :PDF: [[Media:Biofilms_paper.pdf]] | ||
| − | :Data at: [http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE26976 GEO link] | + | :Data at: [http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE26976 GEO link] and [http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-26976/?query=streptococcus+pneumoniae Array Express link] |
:Experiments Performed: Examined genes related to biofilm formation of Streptococcus pneumoniae | :Experiments Performed: Examined genes related to biofilm formation of Streptococcus pneumoniae | ||
:Replicates: 3 biological replicates, 3+ technical replicates | :Replicates: 3 biological replicates, 3+ technical replicates | ||
Revision as of 17:40, 14 November 2013
Contents |
Group Presentation
Team Journal Club Presentation
Papers
Genome Paper
Title: Genome of the Bacterium Streptococcus pneumoniae Strain R6
- Reference: Hoskins, J., Alborn, W.E. Jr., Arnold, J., Blaszczak, L.C., Burgett, S., Bradley, S., DeHoff, S.T., Estrem, L.F., Fu, D.J., Fuller, W., Geringer, C., Gilmour, R., Glass, J.S., Khoja1, H., Kraft, A.R., Lagace, R.E., LeBlanc, D.J., Lee, L.N., Lefkowitz, E.J., Lu, J., Matsushima, P., McAhren, S.M., McHenney, M., McLeaster, K., Mundy, C.W., Nicas, T.I., Norris, F.H., O'Gara1, M.J., Peery, R.B., Robertson, G.T., Rockey, P., Sun, P.M., Winkler, M.E., Yang, Y., Young-Bellido, M., Zhao, G., Zook, C.A., Baltz, R.H., Jaskunas, S.R., Rosteck Jr., P.R., Skatrud, P.L., and Glass, J.I. (2001) Genome of the bacterium Streptococcus pneumoniae strain R6. Journal of Bacteriology 183(19): 5709-5717. doi: 10.1128/JB.183.19.5709-5717.2001
Microarray Paper
Sanchez et. al. 2011
- Streptococcus pneumoniae in Biofilms Are Unable to Cause Invasive Disease Due to Altered Virulence Determinant Production
- Web Link: Biofilm paper
- PDF: Media:Biofilms_paper.pdf
- Data at: GEO link and Array Express link
- Experiments Performed: Examined genes related to biofilm formation of Streptococcus pneumoniae
- Replicates: 3 biological replicates, 3+ technical replicates
- Reference: Sanchez, C.J., Kumar, N., Lizcano, A., Shivshankar, P., Dunning Hotopp, J.C., Jorgensen, J.H., Tettelin, H., and Orihuela, C.J. (2011) Streptococcus pneumoniae in Biofilms Are Unable to Cause Invasive Disease Due to Altered Virulence Determinant Production. PLoS ONE 6(12): e28738. doi:10.1371/journal.pone.0028738
- Found by Kevin
Downloaded Files
Uniprot XML File:
R6: XML
TIGR4: XML
G54: XML
GOA:
TIGR4: GOA
R6: GOA
G54: GOA
GO-OBO File: GO-OBO zip
- Raw Data
First gmbuilder exports
- G54: Media:20131113 G45export tATK TPV.gdb
- R6: Media:20131113 R6export tATK TPV.gdb
- TIGR4: Media:20131107_GenMAPPExport_tATK_TIGR4_TPV.gdb
Team ATK
Team Leader: Tauras
- Coder: Tauras
- Quality Assurance: Alina
- GenMAPP User: Kevin Meilak
Template
| Alina's User Page | Kevin's User Page | Tauras's User Page |
| Biological Databases Class Page | Gene Database Project | Gene Database Project Report Guidelines |
Streptococcus pneumoniae
- Import Export Cycle 1: tATK Export One: TIGR4 Testing Report
- Import Export Cycle 2: tATK E2: TIGR4 Testing Report
- Import Export Cycle 3: tATK E3: TIGR4 Testing Report
- Import Export Cycle 4: tATK E4: TIGR4 Testing Report
| Project Roles: | Project Manager | Coder | GenMAPP User | Quality Assurance |
