Vkuehn Week 15

ELECTRONIC NOTEBOOK

P-value less than 0.05: 5303
P-value less that 0.01: 2130
P-value less that 0.001: 317
P-value less that 0.0001: 0
Out of the 19201 T tests performed, more than 960 results had a P-value less than 0.05. Since 5303 genes passed this cut off it means that there were some significant changes.
Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC" column to show all genes with an average log fold change greater than zero. These were the ones that increased relative to control. There were 2970
Genes with an average log fold change less than zero. These were the ones that decreased relative to control. There were: 2334
Average log fold change of > 0.25 and p < 0.05: 2861
Average log fold change of < -0.25 and p < 0.05: 2431

For exact procedure reference [Vkuehn Week 13] or the procedure from http://www.openwetware.org/wiki/BIOL367/F10:GenMAPP_and_MAPPFinder_Protocols
The colors were assigned to the two main criterion
- Increased relative to control had a Log FC> 0.25 and P-Value <0.05 these were colored blue
- Decreased relative to control had a Log FC< -0.25 and P-Value <0.05 these were colored purple

Ran genmapp and waiting for results to be generated