TATK Week 13 Status Report

Week Goals and Status Report

1. To create the compiled raw data file

• This was completed by Kevin on 11/18/13 and uploaded to the team wiki page

Next Steps

1. To fix the issues with the compiled raw data file
2. To follow the instructions concerning the normalization of data and begin statistical tests

Deliverables

Individuals

• Compiled raw data file from Kevin

Team Reflections

Kevin Meilak

1. What worked?

• I was able to make the compiled raw data file

2. What didn't work?

• I was not able to fix the issues with the compiled raw data file or begin statistical tests due to travel

3. What will I do next to fix what didn't work?

• Work with the data over the weekend

Alina Vreeland

What were the week’s key accomplishments?

• All three exports were completed, along with the counting from all the different programs. We were able to start analyzing the data and comparing the gene id's.

What are next week’s target accomplishments?

• To start navigating through the microarray data and looking for/fixing the mistakes found in the raw data file.

What team strengths were seen this week?

• We made significant progress in analyzing the microarray data and finishing the exports for TIGR4. We also completed the counting tasks using TallyEngine, XMLpipedb match, and SQL.

What team weaknesses were seen this week?

• It was unfortunate that Kevin wasn't able to join us on Thursday this week, since he has been working the closest with the microarray data. More work is needed in that area, so we can begin doing statistical tests.

Template

Alina's User Page

Kevin's User Page

Tauras's User Page

Biological Databases Class Page

Gene Database Project

Gene Database Project Report Guidelines

Streptococcus pneumoniae

Import Export Cycle 1: tATK Export One: TIGR4 Testing Report

Import Export Cycle 2: tATK E2: TIGR4 Testing Report

Import Export Cycle 3: tATK E3: TIGR4 Testing Report

Import Export Cycle 4: tATK E4: TIGR4 Testing Report

Data Information

Project Roles:

Project Manager

Coder

GenMAPP User

Quality Assurance

• Kmeilak Week 10, Kmeilak Week 11, Kmeilak Week 12, Kmeilak Week 13
• Taur.vil Week 10, Taur.vil Week 11, Taur.vil Week 12, Taur.vil Week 13, Taur.vil Week 14, Taur.vil Week 15
• Ajvree Week 10, Ajvree Week 11, Ajvree Week 12, Ajvree Week 13, Ajvree Week 14, Ajvree Week 15