Difference between revisions of "Heavy Metal HaterZ"
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==Week 10 Assignment : Annotated Bibliography== | ==Week 10 Assignment : Annotated Bibliography== | ||
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*APA citation: Heidelberg, J. F., Paulsen, I. T., Nelson, K. E., Gaidos, E. J., Nelson, W. C., Read, T. D., ... & Fraser, C. M. (2002). Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis. ''Nature biotechnology, 20''(11), 1118-1123. | *APA citation: Heidelberg, J. F., Paulsen, I. T., Nelson, K. E., Gaidos, E. J., Nelson, W. C., Read, T. D., ... & Fraser, C. M. (2002). Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis. ''Nature biotechnology, 20''(11), 1118-1123. | ||
*PubMed [http://www.ncbi.nlm.nih.gov/pubmed/?term=Genome+sequence+of+the+dissimilatory+metal+ion%E2%80%93reducing+bacterium+Shewanella+oneidensis abstract] | *PubMed [http://www.ncbi.nlm.nih.gov/pubmed/?term=Genome+sequence+of+the+dissimilatory+metal+ion%E2%80%93reducing+bacterium+Shewanella+oneidensis abstract] | ||
| − | *PubMedCentral article: | + | *PubMedCentral article: N/A (This article was not found on PubMedCentral.) |
*[http://www.nature.com/nbt/journal/v20/n11/full/nbt749.html Full text] from publisher website | *[http://www.nature.com/nbt/journal/v20/n11/full/nbt749.html Full text] from publisher website | ||
*[http://www.nature.com/nbt/journal/v20/n11/pdf/nbt749.pdf PDF file] from publisher website | *[http://www.nature.com/nbt/journal/v20/n11/pdf/nbt749.pdf PDF file] from publisher website | ||
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**581 articles cite this article | **581 articles cite this article | ||
*Based on the titles and abstracts of the papers, what type of research directions have been taken now that the genome for that organism has been sequenced? | *Based on the titles and abstracts of the papers, what type of research directions have been taken now that the genome for that organism has been sequenced? | ||
| − | **Sample article titles | + | **Sample article titles: |
***Environmental genome shotgun sequencing of the Sargasso Sea | ***Environmental genome shotgun sequencing of the Sargasso Sea | ||
***Dissimilatory Fe (iii) and Mn (iv) reduction | ***Dissimilatory Fe (iii) and Mn (iv) reduction | ||
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***Microorganisms pumping iron: anaerobic microbial iron oxidation and reduction | ***Microorganisms pumping iron: anaerobic microbial iron oxidation and reduction | ||
***Genome of Geobacter sulfurreducens: metal reduction in subsurface environments | ***Genome of Geobacter sulfurreducens: metal reduction in subsurface environments | ||
| − | **Based upon these titles, the original paper has been used for the genomes of other organisms and to look at the interaction of the original genome with various metals | + | **Based upon these titles, the original paper has been used for the genomes of other organisms and to look at the interaction of the original genome with various metals. This could be useful for looking at how organisms are impacted by the environment, especially if humans are influencing the metal composition of the soil. |
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===List of Microarray Papers=== | ===List of Microarray Papers=== | ||
Revision as of 01:01, 10 November 2015
Contents
Shewanella oneidensis
Our Gene Database Testing Report
Group Paper - File:Final Report 20151218 2 HMH.docx
Group Members
- Coder: Mary Alverson
- GenMAPP User & Project Manager: Ron Legaspi
- Quality Assurance: Josh Kuroda
- GenMAPP User: Emily Simso
Important Links
Our Files
Our Deliverables
| Gene Database Project Links | |||||||
|---|---|---|---|---|---|---|---|
| Overview | Deliverables | Reference Format | Guilds | Project Manager | GenMAPP User | Quality Assurance | Coder |
| Teams | Heavy Metal HaterZ | The Class Whoopers | GÉNialOMICS | Oregon Trail Survivors | |||
| Individual Journal Entries | ||||
|---|---|---|---|---|
| Mary Alverson | Week 11 | Week 12 | Week 14 | Week 15 |
| Emily Simso | Week 11 | Week 12 | Week 14 | Week 15 |
| Ron Legaspi | Week 11 | Week 12 | Week 14 | Week 15 |
| Josh Kuroda | Week 11 | Week 12 | Week 14 | Week 15 |
Week 10 Assignment : Annotated Bibliography
Individual Biographies
Our Genome Paper
- APA citation: Heidelberg, J. F., Paulsen, I. T., Nelson, K. E., Gaidos, E. J., Nelson, W. C., Read, T. D., ... & Fraser, C. M. (2002). Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis. Nature biotechnology, 20(11), 1118-1123.
- PubMed abstract
- PubMedCentral article: N/A (This article was not found on PubMedCentral.)
- Full text from publisher website
- PDF file from publisher website
- Article rights: publisher owns the copyright
- Publishing organization of article: Nature Publishing Group, which is a for-profit organization
- Print or online only: online only
- Has LMU paid subscription: no
- How many articles does this article cite?
- 48 other articles
- How many articles cite this article?
- 581 articles cite this article
- Based on the titles and abstracts of the papers, what type of research directions have been taken now that the genome for that organism has been sequenced?
- Sample article titles:
- Environmental genome shotgun sequencing of the Sargasso Sea
- Dissimilatory Fe (iii) and Mn (iv) reduction
- Deciphering the evolution and metabolism of an anammox bacterium from a community genome
- Microorganisms pumping iron: anaerobic microbial iron oxidation and reduction
- Genome of Geobacter sulfurreducens: metal reduction in subsurface environments
- Based upon these titles, the original paper has been used for the genomes of other organisms and to look at the interaction of the original genome with various metals. This could be useful for looking at how organisms are impacted by the environment, especially if humans are influencing the metal composition of the soil.
- Sample article titles:
List of Microarray Papers
- We will rank these eventually.
- Papers can be found at this link
- E-GEOD-15334 - Emily
- E-GEOD-21044 - Josh
- E-GEOD-15657 - Ron
- E-MTAB-266 - Mary
- E-MTAB-319 - Mary
