Difference between revisions of "Heavy Metal HaterZ Deliverables"
From LMU BioDB 2015
(→Group Files and Datasets: GenMAPP Expression Dataset file) |
(→Group Files and Datasets: adding files) |
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* Processed and analyzed DNA microarray dataset (''.xls'' or ''.xlsx'') | * Processed and analyzed DNA microarray dataset (''.xls'' or ''.xlsx'') | ||
* [[Media:CompiledRawData ForGenMAPP 20151208 HMH.txt | Data file]] used for import into GenMAPP | * [[Media:CompiledRawData ForGenMAPP 20151208 HMH.txt | Data file]] used for import into GenMAPP | ||
| − | * [[Media:CompiledRawData ForGenMAPP 20151210 HMH. | + | * [[Media:CompiledRawData ForGenMAPP 20151210 HMH.gex | GenMAPP Expression Dataset file]] |
| − | * Exceptions file of data imported into GenMAPP | + | * [[Media:CompiledRawData ForGenMAPP 20151210 HMH.EX.txt | Exceptions file]] of data imported into GenMAPP |
| − | * Raw MAPPFinder results files | + | * Raw MAPPFinder results files: |
| − | * ''.gmf'' file | + | ** [[Media:MAPPFINDER 20151212-Criterion0-GO.txt | criterion 0]] |
| + | ** [[Media:MAPPFINDER 20151212-Criterion1-GO.txt | criterion 1]] | ||
| + | * [[Media:CompiledRawData ForGenMAPP 20151210 HMH.zip | ''.gmf'' file]] | ||
* Filtered MAPPFinder Results (''.xls'' or ''.xlsx'') | * Filtered MAPPFinder Results (''.xls'' or ''.xlsx'') | ||
| + | **[[Media:MAPPFINDER 20151212-Criterion0-GO.xlsx | criterion 0]] | ||
| + | **[[Media:MAPPFINDER 20151212-Criterion1-GO 20151212 HMH.xlsx | criterion 1]] | ||
* Sample MAPP file of a relevant biological pathway for your species (''.mapp'') | * Sample MAPP file of a relevant biological pathway for your species (''.mapp'') | ||
* [[Gene Database Project Deliverables#Group Report | Group Report]] describing the creation of the Gene Database and the biological analysis of the data (''.doc'', ''.docx'', or ''.pdf'') | * [[Gene Database Project Deliverables#Group Report | Group Report]] describing the creation of the Gene Database and the biological analysis of the data (''.doc'', ''.docx'', or ''.pdf'') | ||
Revision as of 00:38, 13 December 2015
Contents
Shewanella oneidensis
Our Gene Database Testing Report
Group Paper - File:Final Report 20151218 2 HMH.docx
Group Members
- Coder: Mary Alverson
- GenMAPP User & Project Manager: Ron Legaspi
- Quality Assurance: Josh Kuroda
- GenMAPP User: Emily Simso
Important Links
Our Files
Our Deliverables
| Gene Database Project Links | |||||||
|---|---|---|---|---|---|---|---|
| Overview | Deliverables | Reference Format | Guilds | Project Manager | GenMAPP User | Quality Assurance | Coder |
| Teams | Heavy Metal HaterZ | The Class Whoopers | GÉNialOMICS | Oregon Trail Survivors | |||
| Individual Journal Entries | ||||
|---|---|---|---|---|
| Mary Alverson | Week 11 | Week 12 | Week 14 | Week 15 |
| Emily Simso | Week 11 | Week 12 | Week 14 | Week 15 |
| Ron Legaspi | Week 11 | Week 12 | Week 14 | Week 15 |
| Josh Kuroda | Week 11 | Week 12 | Week 14 | Week 15 |
Group Files and Datasets
- GenMAPP Gene Database for assigned species
- ReadMe file to accompany the Gene Database (.pdf)
- Shewanella onedensis ReadMe
- Include Gene Database Schema diagram in ReadMe
- Sample schema in Adobe Illustrator format: Vibrio_schema_20101022.zip
- Gene Database Testing Report for final submitted Gene Database
- Processed and analyzed DNA microarray dataset (.xls or .xlsx)
- Data file used for import into GenMAPP
- GenMAPP Expression Dataset file
- Exceptions file of data imported into GenMAPP
- Raw MAPPFinder results files:
- .gmf file
- Filtered MAPPFinder Results (.xls or .xlsx)
- Sample MAPP file of a relevant biological pathway for your species (.mapp)
- Group Report describing the creation of the Gene Database and the biological analysis of the data (.doc, .docx, or .pdf)
- PowerPoint presentation (.ppt, .pptx, or .pdf, given on Tuesday, December 15)
