Difference between revisions of "Bordetella Pertussis GenMAPP Analysis Deliverables"
From LMU BioDB 2015
Lenaolufson (Talk | contribs) (→Group Files and Datasets: added new ribosome mapp with BHpvalue criteria) |
Lenaolufson (Talk | contribs) (→Group Files and Datasets: added new gex file for BHpvalue criteria) |
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* Processed and analyzed DNA microarray dataset: [[Media:Bpertussis compiledrawdata cw20151208.xlsx]] | * Processed and analyzed DNA microarray dataset: [[Media:Bpertussis compiledrawdata cw20151208.xlsx]] | ||
* Data file used for import into GenMAPP: [[Media:Bpertussis compiledrawdata cw20151208.txt]] | * Data file used for import into GenMAPP: [[Media:Bpertussis compiledrawdata cw20151208.txt]] | ||
| − | * GenMAPP Expression Dataset file: [[Media:Bpertussis | + | * GenMAPP Expression Dataset file: [[Media:Bpertussis compiledrawdata cw20151218.gex]] |
* Exceptions file of data imported into GenMAPP: [[Media:Bpertussis expressiondataset exceptions cw20151213.EX.txt]] | * Exceptions file of data imported into GenMAPP: [[Media:Bpertussis expressiondataset exceptions cw20151213.EX.txt]] | ||
* Raw MAPPFinder results files: | * Raw MAPPFinder results files: | ||
** [[Media:Bpertussis mappfinderresults cw20151218-Criterion0-GO.txt|Increased]] | ** [[Media:Bpertussis mappfinderresults cw20151218-Criterion0-GO.txt|Increased]] | ||
** [[Media:Bpertussis mappfinderresults cw20151218-Criterion1-GO.txt|Decreased]] | ** [[Media:Bpertussis mappfinderresults cw20151218-Criterion1-GO.txt|Decreased]] | ||
| − | * ''.gmf'' file: [[ | + | * ''.gmf'' file: [[Media:Bpertussis compiledrawdata cw20151218.gmf]] |
* Filtered MAPPFinder Results: | * Filtered MAPPFinder Results: | ||
** [[Media:Bpertussis mappfinderresults cw20151218-Criterion0-GO - Filtered.xlsx|Increased]] | ** [[Media:Bpertussis mappfinderresults cw20151218-Criterion0-GO - Filtered.xlsx|Increased]] | ||
Revision as of 21:51, 18 December 2015
Contents
Group Files and Datasets
- GenMAPP Gene Database for assigned species: Media:Bpertussis-std cw20151210.zip
- ReadMe file to accompany the Gene Database: Media:ReadMe bpertussis-std cw20151210.docx
- Gene Database Testing Report for final submitted Gene Database: Media:Gdb testingreport cw20151210.pdf
- Processed and analyzed DNA microarray dataset: Media:Bpertussis compiledrawdata cw20151208.xlsx
- Data file used for import into GenMAPP: Media:Bpertussis compiledrawdata cw20151208.txt
- GenMAPP Expression Dataset file: Media:Bpertussis compiledrawdata cw20151218.gex
- Exceptions file of data imported into GenMAPP: Media:Bpertussis expressiondataset exceptions cw20151213.EX.txt
- Raw MAPPFinder results files:
- .gmf file: Media:Bpertussis compiledrawdata cw20151218.gmf
- Filtered MAPPFinder Results:
- Sample MAPP file of a relevant biological pathway for your species: File:Bpertussis ribosomepathway cw20151218.mapp
- Group Report describing the creation of the Gene Database and the biological analysis (.doc, .docx, or .pdf)
- PowerPoint presentation: Media:Bpertussis findings powerpoint.pdf
Team Information & Links
GenMAPP Analysis of Bordetella pertussis Microarray Data
| Gene Database Project Links | |||||||
|---|---|---|---|---|---|---|---|
| Overview | Deliverables | Reference Format | Guilds | Project Manager | GenMAPP User | Quality Assurance | Coder |
| Teams | Heavy Metal HaterZ | The Class Whoopers | GÉNialOMICS | Oregon Trail Survivors | |||
Journal Entries
| Class Whoopers Individual Journal Entries | ||||
|---|---|---|---|---|
| Brandon Klein | Week 11 | Week 12 | Week 14 | Week 15 |
| Lena Olufson | Week 11 | Week 12 | Week 14 | Week 15 |
| Mahrad Saeedi | Week 11 | Week 12 | Week 14 | Week 15 |
| Team Entries | Week 11 | Week 12 | Week 14 | Week 15 |
Group Members
- Project Manager & Coder: Brandon Klein
- Quality Assurance: Mahrad Saeedi
- GenMAPP User: Lena Olufson
- Team Page
