Blitvak Week 8

Week 8 Individual Journal

DNA Microarray Analysis part 1

• Merrell_Compiled_Raw_Data_Vibrio.xls was downloaded and opened with Excel

• Modified Excel File/Data

• For GenMAPP

Working with: 2009 Vibrio Cholera database

• 772 errors were detected in the raw data by genMAPP using the 2009 database
• 121 errors were detected in the raw data by genMAPP using the 2010 database by my partner, Anindita V.

Results of 10/20 Work Session

.gex file for GenMAPP

Results of 10/22 Work Session

• Top 10 Ranked GO Terms

1. macromolecule metabolic process
2. localization
3. transporter activity
4. cellular macromolecule metabolic process
5. transport
6. establishment of localization
7. cell projection organization
8. cellular biopolymer metabolic process
9. macromolecule biosynthetic process
10. biopolymer metabolic process

• Analysis of the .EX.txt file produced by GenMAPP, via Excel, revealed that the 772 errors were: Gene not found in OrderedLocusNames or any related system; this suggests that the 2009 database did not

increased expression

---

Brandon Litvak
BIOL 367, Fall 2015

Weekly Assignments	Individual Journal Pages	Shared Journal Pages
Week 1 Week 2 Week 3 Week 4 Week 5 Week 6 Week 7 Week 8 Week 9 Week 10 Week 11 Week 12 Week 14 Week 15	Week 2 Week 3 Week 4 Week 5 Week 6 Week 7 Week 8 Week 9 Week 10 Week 11 Week 12 Week 14 Week 15	Week 1 Week 2 Week 3 Week 4 Week 5 Week 6 Week 7 Week 8 Week 9 Week 10 Week 11 Week 12 Week 14 Week 15