Dbashour Week 11

Electronic Notebook

Annotated Bibliography

1. Murata et. al.(2006). Genome-wide expression analysis of yeast response during exposure to 4 C. Extremophiles, 10(2), 117-128.
   • Link to PubMed Abstract: https://www.ncbi.nlm.nih.gov/pubmed/16254683
   • Link to PubMed Central: N/A
   • Link to Publisher's full text: https://link.springer.com/article/10.1007/s00792-005-0480-1#citeas
   • Link to Publisher's PDF: https://link.springer.com/content/pdf/10.1007%2Fs00792-005-0480-1.pdf
   • Copyright: 2005 by Springer-Verlag
   • Organization of publisher: Springer-Verlag in Extremophiles
   • Availability: Online and in print, LMU pays a subscription fee for this journal
2. Sahara, T., Goda, T., & Ohgiya, S. (2002). Comprehensive expression analysis of time-dependent genetic responses in yeast cells to low temperature. Journal of Biological Chemistry, 277(51), 50015-50021.
   • Link to PubMed Abstract: https://www.ncbi.nlm.nih.gov/pubmed/12379644?dopt=Abstract
   • Link to PubMed Central: N/A
   • Link to Publisher's full text: http://www.jbc.org/content/277/51/50015.long
   • Link to Publisher's PDF: http://www.jbc.org/content/277/51/50015.full.pdf
   • Copyright: 2002 by The Journal of Biological Chemistry
   • Organization of publisher: American Society for Biochemistry and Molecular Biology
   • Availability: Open Access on the day of acceptance, in print and online

PubMed, Google Scholar, and Web of Science Analyses

1. Keyword search:
   • PubMed
     • I used the keywords "Saccharomyces cerevisiae" and "cold shock" got 134 results.
     • Rearranging the terms did not change the number of results, but in order to narrow the search, I added the search term "microarray" which yielded 6 results.
   • Google Scholar
     • I used the keywords "Saccharomyces cerevisiae", "cold shock", and "microarray" and got 15,500 results.
     • All of the terms were useful in this case. When rearranged in different orders, the terms still yielded the same number of results.
   • Web of Science
     • I used the keywords "Saccharomyces cerevisiae" and "cold shock" and got 200 results.
     • In order to narrow down the search, I used the "search within results for..." function and added the term "microarray" and this left me with 15 results to choose from. Choosing these words in different orders did not make a difference.
2. Advanced search functions for each of these three databases/tools and answer the following:
   • PubMed
     • Because my previous search with just the keywords yielded a small list, narrowing the search did not do anything. I used the advance search option to specify the publication date to be between 2000-2017 and yielded the same 6 results.
   • Google Scholar
     • Using the advanced search function, I was not able to narrow down the search that well with google scholar. The only one that yielded a different number of results was narrowing the search to be within the dates of 2000-2017. This gave me 14,800 results.
   • Web of Science
     • I used the advanced search option where I narrowed the search down by topic, then specifying for only articles, then specifying for articles in english. This left me with 15 results.

Prospective search on 3 articles

1. Aguilera, J., Randez-Gil, F., & Prieto, J.A. (2007). Cold Response in Saccharomyces cerevisiae: New Functions for Old Mechanisms. FEMS Microbiological Reviews, 31, 327–341. doi: 10.1111/j.1574-6976.2007.00066.x
   • There are 144 cited references.
   • 77 articles cite this article.
2. Al-Fageeh, M.B. & Smales, C.M. (2006). Control and Regulation of the Cellular Responses to Cold Shock: the Responses in Yeast and Mammalian Systems. Biochemical Journal, 397, 247–259. doi: 10.1042/BJ20060166
   • This article has 125 cited references.
   • 108 articles cite this article.
3. Thieringer, H.A., Jones, P.G.,& Inouye, M. (1998). Cold shock and adaptation. BioEssays, 20, 49–57. doi: 10.1002/(SICI)1521-1878(199801)20:1<49::AID-BIES8>3.0.CO;2-N
   • This article has 76 cited references.
   • 258 articles cite this article.

Acknowledgements

I worked with Corrine Wong on this assignment. We worked together in class to make sure we didn't use the same articles. We also communicated via text over the weekend. While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source.

Dbashour (talk) 23:05, 13 November 2017 (PST)

References

LMU BioDB 2017. (2017). Week 11. Retrieved November 7, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_11
Murata et. al.(2006). Genome-wide expression analysis of yeast response during exposure to 4 C. Extremophiles, 10(2), 117-128.
Sahara, T., Goda, T., & Ohgiya, S. (2002). Comprehensive expression analysis of time-dependent genetic responses in yeast cells to low temperature. Journal of Biological Chemistry, 277(51), 50015-50021.

Dina Bashoura

Biological Databases Homepage

List of Assignments

• Week 1
• Week 2
• Week 3
• Week 4
• Week 5
• Week 6
• Week 7
• Week 8
• Week 9
• Week 10
• Week 11
• Week 12
• Week 14
• Week 15

List of Individual Journal Entries

• dbashour Week 2
• dbashour Week 3
• dbashour Week 4
• dbashour Week 5
• dbashour Week 6
• dbashour Week 7
• dbashour Week 8
• dbashour Week 9
• dbashour Week 10
• dbashour Week 11
• dbashour Week 12
• dbashour Week 14
• dbashour Week 15

List of Shared Journal Entries

• Class Journal Week 1
• Class Journal Week 2
• Class Journal Week 3
• Class Journal Week 4
• Class Journal Week 5
• Class Journal Week 6
• Class Journal Week 7
• Class Journal Week 8
• Class Journal Week 9
• Class Journal Week 10

List of Final Assignments

• dbashour Final Reflection
• Gene hAPI Deliverables
• Final Group Report

List of Team Journal Assignments

• Gene hAPI