FunGals Deliverables

Information and Links

FunGals Links
BIOL Databases Main Page	FunGals: Project Overview Page	Final Project Deliverables Requirements	FunGals: Final Project Deliverables
				Assignment Pages	Week 11	Week 12/13	Week 15

• Thiuram Article

User Pages

Knguye66 
Marmas
Icrespin
Eyoung20

Template Page

Template:FunGals

Checklist

Tasks to be completed	Complete/Incomplete
Organized Team deliverables wiki page (or other media (CD or flash drive) with table of contents)	Complete
Group Report (.doc, .docx or .pdf file)	Incomplete
Individual statements of work, assessments, reflections (wiki page, .doc, .docx, .pdf, or e-mailed to Dr. Dahlquist)	Incomplete
Group PowerPoint presentation (given on Tuesday, December 10, .ppt, .pptx or .pdf file)	Complete
Sample-data relationship table in Excel (.xlsx)	Complete
Excel spreadsheet with ANOVA results/stem formatting (.xlsx)	Complete
PowerPoint of ANOVA table, screenshots of stem results (.pptx), screenshot of black and white GRNsight input network and colored GRNsight output networks	Incomplete
Gene List and GO List files from each significant profile (.txt compressed together in a .zip file)	Complete
YEASTRACT "rank by TF" results (.xlsx)	Complete
GRNmap input workbook (with network adjacency matrix, .xlsx)	Complete
GRNmap output workbook (.xlsx) and output plots (.jpg) zipped together	Complete
MS Access database, unified by the three teams with expression tables and metadata table(s) created (.accdb)	Complete
ReadMe for the database that describes the design of the database, references the sources of the data, and has a database schema diagram (.doc, .docx, .pdf)	Complete
Query design for populating a GRNmap input workbook from the database (screenshot of MS Access, or SQL code, .txt)	Incomplete
Electronic notebook corresponding to these the microarray results files (Week 12/13 and Week 15) to support reproducible research so that all manipulations of the data and files are documented so that someone else could begin with your starting file, follow the protocol, and obtain your results.	Incomplete

Data and Files

• Sample-Data Relationship Table (Metadata Sheet)
• ANOVA Results/STEM formatting (.xlsx)
• Genelist from STEM
• GOlist from STEM
• YEASTRACT Rank by TF - Green and Red Profiles (.xlsx)
• Green Regulation Matrix/network (.xlsx)
• Input Workbook for Green profile (.xlsx)
• Input Workbook Red network (.xlsx)
• Output Workbook & GRNModel from MatLab for Green profile (.zip)
• Output Workbook & GRNModel from MatLab for Red profile (.zip)
• Final Presentation

Individual Assessment and Reflection

Michael Armas

Statement of Work

• Describe exactly what you did on the project.
• Provide references or links to artifacts of your work, such as:
  • Wiki pages
  • Other files or documents
  • Code or scripts

Assessment of Project

• Give an objective assessment of the success of your project workflow and teamwork.
• What worked and what didn't work?
• What would you do differently if you could do it all over again?
• Evaluate your team’s portion of the Final Project and Group Report in the following areas:
  1. Content: What is the quality of the work?
  2. Organization: Comment on the organization of the project and of your group's wiki pages.
  3. Completeness: Did your team achieve all of the project objectives? Why or why not?

Reflection on the Process

• What did you learn?
  • With your head (biological or computer science principles)
  • With your heart (personal qualities and teamwork qualities that make things work or not work)?
  • With your hands (technical skills)?
• What lesson will you take away from this project that you will still use a year from now?

Kaitlyn Nguyen

Statement of Work

• Describe exactly what you did on the project.
• Provide references or links to artifacts of your work, such as:
  • Wiki pages
  • Other files or documents
  • Code or scripts

Assessment of Project

• Give an objective assessment of the success of your project workflow and teamwork.
• What worked and what didn't work?
• What would you do differently if you could do it all over again?
• Evaluate your team’s portion of the Final Project and Group Report in the following areas:
  1. Content: What is the quality of the work?
  2. Organization: Comment on the organization of the project and of your group's wiki pages.
  3. Completeness: Did your team achieve all of the project objectives? Why or why not?

Reflection on the Process

• What did you learn?
  • With your head (biological or computer science principles)
  • With your heart (personal qualities and teamwork qualities that make things work or not work)?
  • With your hands (technical skills)?
• What lesson will you take away from this project that you will still use a year from now?

Emma Young

Statement of Work

• Describe exactly what you did on the project.
• Provide references or links to artifacts of your work, such as:
  • Wiki pages
  • Other files or documents
  • Code or scripts

Assessment of Project

• Give an objective assessment of the success of your project workflow and teamwork.
• What worked and what didn't work?
• What would you do differently if you could do it all over again?
• Evaluate your team’s portion of the Final Project and Group Report in the following areas:
  1. Content: What is the quality of the work?
  2. Organization: Comment on the organization of the project and of your group's wiki pages.
  3. Completeness: Did your team achieve all of the project objectives? Why or why not?

Reflection on the Process

• What did you learn?
  • With your head (biological or computer science principles)
  • With your heart (personal qualities and teamwork qualities that make things work or not work)?
  • With your hands (technical skills)?
• What lesson will you take away from this project that you will still use a year from now?

Iliana Crespin

Statement of Work

• Describe exactly what you did on the project.
• Provide references or links to artifacts of your work, such as:
  • Wiki pages
  • Other files or documents
  • Code or scripts

Assessment of Project

• Give an objective assessment of the success of your project workflow and teamwork.
• What worked and what didn't work?
• What would you do differently if you could do it all over again?
• Evaluate your team’s portion of the Final Project and Group Report in the following areas:
  1. Content: What is the quality of the work?
  2. Organization: Comment on the organization of the project and of your group's wiki pages.
  3. Completeness: Did your team achieve all of the project objectives? Why or why not?

Reflection on the Process

• What did you learn?
  • With your head (biological or computer science principles)
  • With your heart (personal qualities and teamwork qualities that make things work or not work)?
  • With your hands (technical skills)?
• What lesson will you take away from this project that you will still use a year from now?