Difference between revisions of "Skinny Genes Deliverables"
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#* [[Media: Ymesfin_Barreto_ANOVA_no_duplicates_-_Copy.xlsx | ANOVA Data]] | #* [[Media: Ymesfin_Barreto_ANOVA_no_duplicates_-_Copy.xlsx | ANOVA Data]] | ||
# PowerPoint of ANOVA table, screenshots of stem results (''.pptx''), screenshot of black and white GRNsight input network and colored GRNsight output networks | # PowerPoint of ANOVA table, screenshots of stem results (''.pptx''), screenshot of black and white GRNsight input network and colored GRNsight output networks | ||
| + | #* [[Media: Ymesfin_Result.pdf | Stem and GRNsight Network]] | ||
# Gene List and GO List files from each significant profile (''.txt'' compressed together in a ''.zip'' file) | # Gene List and GO List files from each significant profile (''.txt'' compressed together in a ''.zip'' file) | ||
#* [[Media: SkinnyGenesGeneGOLists.zip | Profile 39 Gene Table & Lists (.zip)]] | #* [[Media: SkinnyGenesGeneGOLists.zip | Profile 39 Gene Table & Lists (.zip)]] | ||
Revision as of 13:55, 7 December 2019
| Skinny Genes Links | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| BIOL Databases Main Page | Skinny Genes Project | Skinny Genes Template Page | Skinny Genes Deliverables | Members | Project Manager & Data Analysis: Yeabsira Mesfin | Quality Assurance: Jonar Cowan & Christina Dominguez | Data Analysis: David Ramirez | Coder: Mihir Samdarshi | |
| Assignment Pages | Week 11 | Week 12/13 | Week 15 | ||||||
Data/Files
- Group Report (.doc, .docx or .pdf file)
- Individual statements of work, assessments, reflections (wiki page, .doc, .docx, .pdf, or e-mailed to Dr. Dahlquist)
- Group PowerPoint presentation (given on Tuesday, December 10, .ppt, .pptx or .pdf file)
- Sample-data relationship table in Excel (.xlsx)
- Excel spreadsheet with ANOVA results/stem formatting (.xlsx)
- PowerPoint of ANOVA table, screenshots of stem results (.pptx), screenshot of black and white GRNsight input network and colored GRNsight output networks
- Gene List and GO List files from each significant profile (.txt compressed together in a .zip file)
- YEASTRACT "rank by TF" results (.xlsx)
- GRNmap input workbook (with network adjacency matrix, .xlsx)
- GRNmap output workbook (.xlsx) and output plots (.jpg) zipped together
- MS Access database, unified by the three teams with expression tables and metadata table(s) created (.accdb)
- ReadMe for the database that describes the design of the database, references the sources of the data, and has a database schema diagram (.doc, .docx, .pdf)
- Query design for populating a GRNmap input workbook from the database (screenshot of MS Access, or SQL code, .txt)
- Electronic notebook corresponding to these the microarray results files (Week 12/13 and Week 15) to support reproducible research so that all manipulations of the data and files are documented so that someone else could begin with your starting file, follow the protocol, and obtain your results.
