Mavila9 Week 9

Links

User Page

Template:mavila9

Assignment Page	Individual Journal Entry	Class Journal Entry
Week 1	Week 1 (User page)	Shared Journal Week 1
Week 2	Mavila9 Week 2	Shared Journal Week 2
Week 3	Gene Page Week 3	Shared Journal Week 3
Week 4	Journal Entry Page Week 4	Shared Journal Week 4
Week 5	RNAct Database Page Week 5	Shared Journal Week 5
Week 6	Journal Entry Page Week 6	Shared Journal Week 6
Week 7	Journal Entry Page Week 7	Shared Journal Week 7
Week 8	Journal Entry Page Week 8	Shared Journal Week 8
Week 9	Journal Entry Page Week 9	Shared Journal Week 9
Week 10	Journal Entry Page Week 10	Shared Journal Week 10
Week 11	Sulfiknights Team Page	Shared Journal Week 10
	Journal Entry Page Week 11
Week 12/13	Journal Entry Page Week 12	Shared Journal Week 11
Week 12/13	Sulfiknights DA Week 12/13	Shared Journal Week 12
N/A	Sulfiknights DA Week 14

Purpose

This investigation serves to further analyze the results from running the STEM program on the gene expression change data after cold shock.

Methods & Results

Steps were followed according to Week 9 Assignment page.

Data

media:Genelist mavila9.zip media:GOlist mavila9.zip media:BIOL367 F19 microarray-data wt mavila9.xlsx media:BIOL367 F19 sample p-value slide mavila9.zip

Conclusion

1. Why did you select this profile? In other words, why was it interesting to you?
   • I chose this profile because it was statistically significant and included a decrease in expression.
2. How many genes belong to this profile?
   • 200 genes are assigned to this profile.
3. How many genes were expected to belong to this profile?
   • 60.3 genes were expected to belong to this profile.
4. What is the p value for the enrichment of genes in this profile?
   • 3.1x10(^-48) is the p-value for the enrichment of genes in this profile.
5. How many GO terms are associated with this profile at p < 0.05?
   • 28 GO terms are associated with this profile at p < 0.05.
6. How many GO terms are associated with this profile with a corrected p value < 0.05?
   • 3 GO terms are associated with this profile at p < 0.05.

Acknowledgements

I'd like to thank User:Knguye66, User:Jcowan4, and User:Cdomin12 for helping with this investigation. Except for what is noted above, this individual journal entry was completed by me and not copied from another source. Mavila9 (talk) 14:55, 29 October 2019 (PDT)

References

Week 9. Retrieved October 28, 2019, from https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_9 .