Difference between revisions of "Hivanson Week 15"
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===Electronic laboratory notebook for weeks 14-15=== | ===Electronic laboratory notebook for weeks 14-15=== | ||
| − | I helped Katie and Charlotte with generating the Bonferroni and B&H p-values. All of us worked on a shared Excel file to complete the work. Steps laid out | + | I helped Katie and Charlotte with generating the Bonferroni and B&H p-values. All of us worked on a shared Excel file to complete the work. Steps laid out [[Data_Analysts_Week_14|here]]. I ran the sanity check to find the ideal B&H p-value (significance of ~25%). |
I made the expression table to send to the coder/designers. | I made the expression table to send to the coder/designers. | ||
An error that was encountered when sending the expression table was that I accidentally copy-pasted CHP data for timepoint 6 trial 2 into the spot for CHP timepoint 6 trial 3. This was present in the ANOVA Excel, too. This was quickly ameliorated and the sanity check values were readjusted for the CHP data. | An error that was encountered when sending the expression table was that I accidentally copy-pasted CHP data for timepoint 6 trial 2 into the spot for CHP timepoint 6 trial 3. This was present in the ANOVA Excel, too. This was quickly ameliorated and the sanity check values were readjusted for the CHP data. | ||
| − | I helped Charlotte and Katie run the Stem analysis. Steps | + | I helped Charlotte and Katie run the Stem analysis. Steps outlined [[Data_Analysts_Week_14|here]]. |
I used GRNsight using the first 23 most significant transcription factors from profile 41 from Yeastract. This was not used in the final project. | I used GRNsight using the first 23 most significant transcription factors from profile 41 from Yeastract. This was not used in the final project. | ||
Revision as of 09:19, 3 May 2024
Electronic laboratory notebook for weeks 14-15
I helped Katie and Charlotte with generating the Bonferroni and B&H p-values. All of us worked on a shared Excel file to complete the work. Steps laid out here. I ran the sanity check to find the ideal B&H p-value (significance of ~25%). I made the expression table to send to the coder/designers. An error that was encountered when sending the expression table was that I accidentally copy-pasted CHP data for timepoint 6 trial 2 into the spot for CHP timepoint 6 trial 3. This was present in the ANOVA Excel, too. This was quickly ameliorated and the sanity check values were readjusted for the CHP data.
I helped Charlotte and Katie run the Stem analysis. Steps outlined here.
I used GRNsight using the first 23 most significant transcription factors from profile 41 from Yeastract. This was not used in the final project.
For the final presentation, I made the flow chart, the outline, the Sha et al. background, put together and interpreted the GRNmaps, and drew the comparisons from our data to that of Sha et al. I also helped work on the future directions and conclusion, and finalized the references list.
For the final paper, I wrote the introduction, added figure captions to some of the Data Analysts section, helped with the conclusion, and imported and updated the references.
Team Pages
Role Pages
- Project Manager
- Quality Assurance
- Data Analysis
- Coder/Designer
- Hivanson
- Hivanson Week 1 | Week 1 Assignment
- Hivanson Week 2 | Week 2 Assignment
- IMD3 Hivanson and Nstojan1 Week 3 | Week 3 Assignment
- NeMO Week 4 | Week 4 Assignment
- Hivanson Week 5 | Week 5 Assignment
- Hivanson Week 6 | Week 6 Assignment
- Hivanson Week 8 | Week 8 Assignment
- Hivanson Week 9 | Week 9 Assignment
- Hivanson Week 10 | Week 10 Assignment
- Hivanson Week 12 | Week 12 Assignment
- Hivanson Week 13 | Week 13 Assignment
- Hivanson Week 14 | Week 14 Assignment
- Hivanson Week 15 | Week 15 Assignment
- Main page
