Difference between revisions of "Hivanson Week 9"
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1453 genes; 23.5% | 1453 genes; 23.5% | ||
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| + | '''Find NSR1 in your dataset. What is its unadjusted, Bonferroni-corrected, and B-H-corrected p values? What is its average Log fold change at each of the timepoints in the experiment?''' | ||
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| + | Unadjusted p value: 6.37625E-08 | ||
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| + | Bonferroni-corrected p value: 0.000394626 | ||
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| + | B-H-corrected p value: 2.19237E-05 | ||
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[[Media:HI_BIOL367_S24_microarray-data_dCIN5.xlsx|Excel microarray data]] | [[Media:HI_BIOL367_S24_microarray-data_dCIN5.xlsx|Excel microarray data]] | ||
Revision as of 19:35, 20 March 2024
Begin by recording in your wiki, the strain that you will analyze, the filename, the number of replicates for each strain and each time point in your data.
Strain name: ∆CIN5 strain
Filename: HI_BIOL367_S24_microarray-data_dCIN5.xcls
Number of replicates per strain: 4
Timepoints: 15 minutes, 30 minutes, 60 minutes, 90 minutes, 120 minutes
How many genes have p < 0.05? and what is the percentage (out of 6189)?
2290 genes; 37.0%
How many genes have p < 0.01? and what is the percentage (out of 6189)?
1380 genes; 22.3%
How many genes have p < 0.001? and what is the percentage (out of 6189)?
691 genes; 11.2%
How many genes have p < 0.0001? and what is the percentage (out of 6189)?
358 genes; 5.8%
How many genes are p < 0.05 for the Bonferroni-corrected p value? and what is the percentage (out of 6189)?
151 genes; 2.4%
How many genes are p < 0.05 for the Benjamini and Hochberg-corrected p value? and what is the percentage (out of 6189)?
1453 genes; 23.5%
Find NSR1 in your dataset. What is its unadjusted, Bonferroni-corrected, and B-H-corrected p values? What is its average Log fold change at each of the timepoints in the experiment?
Unadjusted p value: 6.37625E-08
Bonferroni-corrected p value: 0.000394626
B-H-corrected p value: 2.19237E-05
- Hivanson
- Hivanson Week 1 | Week 1 Assignment
- Hivanson Week 2 | Week 2 Assignment
- IMD3 Hivanson and Nstojan1 Week 3 | Week 3 Assignment
- NeMO Week 4 | Week 4 Assignment
- Hivanson Week 5 | Week 5 Assignment
- Hivanson Week 6 | Week 6 Assignment
- Hivanson Week 8 | Week 8 Assignment
- Hivanson Week 9 | Week 9 Assignment
- Hivanson Week 10 | Week 10 Assignment
- Hivanson Week 12 | Week 12 Assignment
- Hivanson Week 13 | Week 13 Assignment
- Hivanson Week 14 | Week 14 Assignment
- Hivanson Week 15 | Week 15 Assignment
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