Hivanson Week 15

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Revision as of 09:36, 3 May 2024 by Hivanson (talk | contribs) (→‎References: added data analysts week 14)
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Electronic laboratory notebook for weeks 14-15

I helped Katie and Charlotte with generating the Bonferroni and B&H p-values. All of us worked on a shared Excel file to complete the work. Steps laid out here. I ran the sanity check to find the ideal B&H p-value (significance of ~25%). I made the expression table to send to the coder/designers. An error that was encountered when sending the expression table was that I accidentally copy-pasted CHP data for timepoint 6 trial 2 into the spot for CHP timepoint 6 trial 3. This was present in the ANOVA Excel, too. This was quickly ameliorated and the sanity check values were readjusted for the CHP data.

I helped Charlotte and Katie run the Stem analysis. Steps outlined here.

I used GRNsight using the first 23 most significant transcription factors from profile 41 from Yeastract. This was not used in the final project.

For the final presentation, I made the flow chart, the outline, the Sha et al. background, put together and interpreted the GRNmaps, and drew the comparisons from our data to that of Sha et al. I also helped work on the future directions and conclusion, and finalized the references list.

For the final paper, I wrote the introduction, added figure captions to some of the Data Analysts section, helped with the conclusion, and imported and updated the references.

Acknowledgments

I worked closely with Katie and Charlotte, the Data Analysts, these past few weeks during class and in person to complete the rest of the data analyst's sections as well as all of the final deliverables. The whole team communicated via text, call, FaceTime, and in person to work on the final presentation and paper.

Except for what is noted above, this individual journal entry was completed by me and not copied from another source.


Hivanson (talk) 10:28, 3 May 2024 (PDT)

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