File list
This special page shows all uploaded files.
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| Date | Name | Thumbnail | Size | User | Description | Versions |
|---|---|---|---|---|---|---|
| 23:44, 7 December 2017 | GRNmap dGLN3 input.xlsx (file) |  |
42 KB | Dbashour | 1 | |
| 23:42, 7 December 2017 | Yeastract results TF DB Gene hAPI.xlsx (file) | |
62 KB | Dbashour | 1 | |
| 23:37, 7 December 2017 | Aporras1 dZAP1 slide.zip (file) | |
31 KB | Aporras1 | P-values of dZAP1 on a powerpoint slide. Redone to fix an upload issue | 4 |
| 23:32, 7 December 2017 | Gene List GO List DB.zip (file) | |
54 KB | Dbashour | 1 | |
| 23:28, 7 December 2017 | 17-genes 39-edges teamINT Sigmoid estimation.xlsx (file) | |
34 KB | Kdahlquist | deleted dHAP4 expression data sheet because no data at all for STB5 at t90; threw and error in GRNmap (YAY!) | 2 |
| 23:24, 7 December 2017 | DGLN3 ANOVA.xlsx (file) | |
18.9 MB | Dbashour | 2 | |
| 23:10, 7 December 2017 | GRNsight Visualization of dZAP1.PNG (file) |  |
99 KB | Aporras1 | Screenshot of GRNsight generated from Media:15-gene_44-edge_teamJASPAR_Sigmoid_estimation.xlsx provided by Dr. Dahlquist to visualize the regulation network. | 1 |
| 22:42, 7 December 2017 | Trimming Network transcription factor deletions dZAP1.zip (file) | |
90 KB | Aporras1 | Networks used in attempting to trim down the size of the GRNsight visualization. | 1 |
| 22:40, 7 December 2017 | Yeastract Matrix DB.xlsx (file) | |
42 KB | Dbashour | 1 | |
| 08:36, 7 December 2017 | 17-genes 19-edges team-hAPI Sigmoid estimation.xlsx (file) | |
33 KB | Kdahlquist | GRNmap input workbook for team hAPI: Mary | 1 |
| 07:38, 7 December 2017 | 15-gene 44-edge teamJASPAR Sigmoid estimation.xlsx (file) | |
36 KB | Kdahlquist | complete input file for GRNmap | 2 |
| 01:21, 6 December 2017 | Mbalduccgene&GOlists.zip (file) | |
81 KB | Mbalducc | 1 | |
| 00:01, 6 December 2017 | Draft LCI Final Presentation.pdf (file) |  |
330 KB | Kwrigh35 | Draft of final presentation made by team Lights, Camera, InterACTION! | 1 |
| 23:52, 5 December 2017 | REGULATIONMATRIXFINAL ET.zip (file) | |
45 KB | Emmatyrnauer | edits during class | 1 |
| 23:51, 5 December 2017 | Mbalducc STEMprofiles.pdf (file) | |
2.08 MB | Mbalducc | 1 | |
| 23:48, 5 December 2017 | Mbalducc profile 22 RegulationMatrix Documented 2017.xlsx (file) | |
37 KB | Mbalducc | 1 | |
| 23:43, 5 December 2017 | Network ARR1 deletion.xlsx (file) | |
35 KB | Aporras1 | Network of the ARR1 deletion in attempt to decrease network size. | 1 |
| 23:30, 5 December 2017 | Mbalducc RegulationMatrix Documented profile 22.xlsx (file) | |
36 KB | Mbalducc | 1 | |
| 05:06, 5 December 2017 | RegulationMatrix yeastract week10etf.xlsx (file) | |
35 KB | Emmatyrnauer | excel workbook used for GRNSight | 1 |
| 03:50, 5 December 2017 | Pagedesignprototype.zip (file) | |
4 KB | Hhinsch | uploaded a zip file for a page design prototype | 1 |
| 02:29, 5 December 2017 | Yeastract profile45results preserved emmat.xlsx (file) | |
42 KB | Emmatyrnauer | yeastract preserved results | 1 |
| 02:22, 5 December 2017 | Wt profileimage presentation emmat.pptx (file) | |
3.92 MB | Emmatyrnauer | added grnsight regulatory network slide to finish week 10 data analysis (milestone 3) | 4 |
| 00:14, 4 December 2017 | AP Regulation Matrix profile22 GRNsight Network.PNG (file) |  |
140 KB | Aporras1 | Screenshot of GRNsight regulatory network for profile22 of dZAP1 created by Antonio Porras. | 1 |
| 00:12, 4 December 2017 | AP Adjacency Matrix profile22 Network dZAP1.xlsx (file) | |
13 KB | Aporras1 | Adjacency matrix for profile 22 including the "network" worksheet for GRNsight. | 1 |
| 23:18, 3 December 2017 | AP Adjacency Matrix profile22 dZAP1.xlsx (file) | |
11 KB | Aporras1 | Adjacency Matrix from profile22 created by YEASTRACT and reformatted with Excel. | 1 |
| 23:52, 1 December 2017 | Sketchofpagedesign.png (file) |  |
870 KB | Hhinsch | this is the sketch of our page design | 1 |
| 23:51, 1 December 2017 | ACT1screenshot.png (file) |  |
339 KB | Hhinsch | screenshot of act1 page | 1 |
| 01:52, 1 December 2017 | Mbalducc STEM.pdf (file) | |
480 KB | Mbalducc | 1 | |
| 00:05, 1 December 2017 | Jasper seq log and freq matrix.png (file) |  |
60 KB | Qlanners | 1 | |
| 23:48, 30 November 2017 | AP Regulation Matrix profile22 dZAP1.xlsx (file) | |
50 KB | Aporras1 | Regulation matrix profile 22 of dZAP1 generated from YEASTRACT. | 1 |
| 23:48, 30 November 2017 | Saccharomycescerevisiae HSF1.pdf (file) | |
5 KB | Cwong34 | Gene map of HSF1 and closely placed genes from Ensembl | 1 |
| 23:19, 30 November 2017 | AP YEASTRACT Transcription Factors.xlsx (file) | |
79 KB | Aporras1 | Manipulation of data through ranking significant transcription factors based of % in user set. | 2 |
| 23:09, 30 November 2017 | Mbalducc Profile 22 yeastract data.xlsx (file) | |
72 KB | Mbalducc | 1 | |
| 23:02, 30 November 2017 | YEASTRACT results ET 20171130.xlsx (file) | |
41 KB | Kdahlquist | YEASTRACT results for Emma | 1 |
| 01:23, 30 November 2017 | AP dZAP1 stem txt.txt (file) |  |
132 KB | Aporras1 | The .txt version of the excel sheet used as input for stem by Antonio Porras for the Week 10 assignment. | 1 |
| 01:19, 30 November 2017 | AP dZAP1 stem.xlsx (file) | |
17.19 MB | Aporras1 | Excel file that was put into stem software created by Antonio Porras for the Week 10 assignment. | 1 |
| 05:04, 29 November 2017 | Mbalducc Profile 38 yeastract data.xlsx (file) | |
69 KB | Mbalducc | 1 | |
| 19:51, 21 November 2017 | Flowchart Design.png (file) |  |
60 KB | Dbashour | 1 | |
| 08:03, 21 November 2017 | Cold Shock Yeast Genome Response.pdf (file) | |
958 KB | Cwong34 | 1 | |
| 07:40, 21 November 2017 | Experimental design et.jpg (file) |  |
1.1 MB | Emmatyrnauer | experimental design week 12 | 1 |
| 07:31, 21 November 2017 | Genome-wide expression analysis of yeast response during exposure to 4 degrees C.pdf (file) | |
236 KB | Kwrigh35 | Emma and Katie's week 12 presentation. Part of team Lights, Camera, InterACTION! | 1 |
| 06:31, 21 November 2017 | Sahara T et al article flowchart CW.png (file) |  |
201 KB | Cwong34 | Flowchart for methods of Sahara, T., Goda, T., & Ohgiya, S. (2002). Comprehensive expression analysis of time-dependent genetic responses in yeast cells to low temperature. Journal of Biological Chemistry, 277(51), 50015-50021 | 1 |
| 05:57, 21 November 2017 | Genome-wide analysis of the yeast transcriptome upon heat and cold shock- Flow chart AP.png (file) |  |
244 KB | Aporras1 | Flow chart of article methods (Done by AP): Genome-wide analysis of the yeasttranscriptome upon heat and cold shock. | 1 |
| 04:38, 21 November 2017 | Genome-wide analysis of the yeast transcriptome upon heat and cold shock. QL AP.zip (file) | |
1.13 MB | Aporras1 | Changed powerpoint title. | 2 |
| 03:50, 21 November 2017 | WT p-value slide ET.pptx (file) | |
44 KB | Emmatyrnauer | fixed typo | 3 |
| 01:58, 21 November 2017 | MaryHaydenWeek12JournalClubPresentation.pptx (file) | |
118 KB | Hhinsch | uploaded mary and hayden's journal club presentation | 1 |
| 20:12, 20 November 2017 | QLanners Journal Flowchart.png (file) |  |
81 KB | Qlanners | uploaded updated version with fraction fixes | 2 |
| 22:44, 19 November 2017 | Week10 filesforstem wildtype emmat.zip (file) | |
144 KB | Emmatyrnauer | minor typo in file name | 3 |
| 22:30, 19 November 2017 | Wt Microarraydata ET.zip (file) | |
6.8 MB | Emmatyrnauer | updating file for week 12 group project | 3 |
| 21:17, 18 November 2017 | QLanners Journal Flowchart.pdf (file) | |
129 KB | Qlanners | 1 |
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