Difference between revisions of "Skinny Genes Deliverables"
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==Data/Files== | ==Data/Files== | ||
| − | # Group Report | + | # Group Report |
| − | # Individual statements of work, assessments, reflections | + | #*[[Media: SkinnyGenes_BioDB_Final_Paper.pdf | Final Report]] |
| − | # Group PowerPoint presentation | + | # Individual statements of work, assessments, reflections |
| − | # Sample-data relationship table in Excel | + | # Group PowerPoint presentation |
| + | #* [[Media: Ymesfin_Barreto_Final_Presentation.pdf | Final Presentation]] | ||
| + | # Sample-data relationship table in Excel | ||
#* [[Media: Ymesfin_Sample_to_Data_Relationship_Table.xlsx | Sample-Data Relationship Table]] | #* [[Media: Ymesfin_Sample_to_Data_Relationship_Table.xlsx | Sample-Data Relationship Table]] | ||
| − | # Excel spreadsheet with ANOVA results/stem formatting | + | # Excel spreadsheet with ANOVA results/stem formatting |
#* [[Media: Ymesfin_Barreto_ANOVA_no_duplicates_-_Copy.xlsx | ANOVA Data]] | #* [[Media: Ymesfin_Barreto_ANOVA_no_duplicates_-_Copy.xlsx | ANOVA Data]] | ||
| − | # PowerPoint of ANOVA table, screenshots of stem results | + | # PowerPoint of ANOVA table, screenshots of stem results, screenshot of black and white GRNsight input network and colored GRNsight output networks |
| − | # Gene List and GO List files from each significant profile | + | #* [[Media: Ymesfin_Result.pdf | Stem and GRNsight Network]] |
| − | #* [[Media: SkinnyGenesGeneGOLists.zip | Profile 39 Gene Table & Lists | + | # Gene List and GO List files from each significant profile |
| − | # YEASTRACT "rank by TF" results | + | #* [[Media: SkinnyGenesGeneGOLists.zip | Profile 39 Gene Table & Lists]] |
| − | #* [[Media: | + | # YEASTRACT "rank by TF" results |
| − | # GRNmap input workbook | + | #* [[Media: Ymesfin_profile39gene_list.xlsx | Rank by TF list]] |
| + | # GRNmap input workbook | ||
#* [[Media: Ymesfin_Barreto_GRNmap_input.xlsx | GRNmap Input]] | #* [[Media: Ymesfin_Barreto_GRNmap_input.xlsx | GRNmap Input]] | ||
| − | # GRNmap output workbook | + | # GRNmap output workbook and output plots zipped together |
#* [[Media: Ymesfin_Barreto_GRNmap_Output.zip | GRNmap Output]] | #* [[Media: Ymesfin_Barreto_GRNmap_Output.zip | GRNmap Output]] | ||
| − | # MS Access database, unified by the three teams with expression tables and metadata table(s) created | + | # MS Access database, unified by the three teams with expression tables and metadata table(s) created |
#* [[Media:BIOL 478 - BioDB CombinedDatabase.zip|MS Access database]] | #* [[Media:BIOL 478 - BioDB CombinedDatabase.zip|MS Access database]] | ||
| − | # ReadMe for the database that describes the design of the database, references the sources of the data, and has a [https://www.quackit.com/microsoft_access/microsoft_access_2016/howto/how_to_create_a_database_diagram_in_access_2016.cfm database schema diagram] | + | # ReadMe for the database that describes the design of the database, references the sources of the data, and has a [https://www.quackit.com/microsoft_access/microsoft_access_2016/howto/how_to_create_a_database_diagram_in_access_2016.cfm database schema diagram] |
#* [[Media:SkinnyGenesDatabaseREADME.pdf|Database README]] | #* [[Media:SkinnyGenesDatabaseREADME.pdf|Database README]] | ||
| − | # Query design for populating a GRNmap input workbook from the database | + | # Query design for populating a GRNmap input workbook from the database |
| + | #* [[Media: Ymesfin_Query_1_Design_Production_Rates.PNG | Query Design 1 - Production Rates]] | ||
| + | #* [[Media: Ymesfin_Query_2_Design_Degradation_Rates.PNG | Query Design 2 - Degradation Rates]] | ||
| + | #* [[Media: Ymesfin_Query_3_Design_Fold_Change.PNG | Query Design 3 - Log Fold Changes]] | ||
# Electronic notebook corresponding to these the microarray results files ([[Week 12/13]] and [[Week 15]]) to support ''reproducible research'' so that all manipulations of the data and files are documented so that someone else could begin with your starting file, follow the protocol, and obtain your results. | # Electronic notebook corresponding to these the microarray results files ([[Week 12/13]] and [[Week 15]]) to support ''reproducible research'' so that all manipulations of the data and files are documented so that someone else could begin with your starting file, follow the protocol, and obtain your results. | ||
Latest revision as of 13:40, 13 December 2019
| Skinny Genes Links | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| BIOL Databases Main Page | Skinny Genes Project | Skinny Genes Template Page | Skinny Genes Deliverables | Members | Project Manager & Data Analysis: Yeabsira Mesfin | Quality Assurance: Jonar Cowan & Christina Dominguez | Data Analysis: David Ramirez | Coder: Mihir Samdarshi | |
| Assignment Pages | Week 11 | Week 12/13 | Week 15 | ||||||
Data/Files
- Group Report
- Individual statements of work, assessments, reflections
- Group PowerPoint presentation
- Sample-data relationship table in Excel
- Excel spreadsheet with ANOVA results/stem formatting
- PowerPoint of ANOVA table, screenshots of stem results, screenshot of black and white GRNsight input network and colored GRNsight output networks
- Gene List and GO List files from each significant profile
- YEASTRACT "rank by TF" results
- GRNmap input workbook
- GRNmap output workbook and output plots zipped together
- MS Access database, unified by the three teams with expression tables and metadata table(s) created
- ReadMe for the database that describes the design of the database, references the sources of the data, and has a database schema diagram
- Query design for populating a GRNmap input workbook from the database
- Electronic notebook corresponding to these the microarray results files (Week 12/13 and Week 15) to support reproducible research so that all manipulations of the data and files are documented so that someone else could begin with your starting file, follow the protocol, and obtain your results.
