Difference between revisions of "Dramir36 Week 7"
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*to revisit the "Deception at Duke" case with new insights because you have analyzed your own dataset. | *to revisit the "Deception at Duke" case with new insights because you have analyzed your own dataset. | ||
| − | ==Methods/Results== | + | ==Notes/Methods/Results== |
*T test: is this gene expression change significantly different than zero at a time point? | *T test: is this gene expression change significantly different than zero at a time point? | ||
Revision as of 14:44, 15 October 2019
User:Dramir36 template:Dramir36 Skinny Genes
- Week 1
- Week 2
- Week 3
- Week 4
- Week 5
- Week 6
- Week 7
- Week 8
- Week 9
- Week 10
- Week 11
- Week 12/13
- Week 14
- Week 15
Purpose
- to conduct the "analyze" step of the data life cycle for a DNA microarray dataset.
- to develop an intuition about what different p-value cut-offs mean.
- to keep a detailed electronic laboratory notebook to facilitate reproducible research.
- to revisit the "Deception at Duke" case with new insights because you have analyzed your own dataset.
Notes/Methods/Results
- T test: is this gene expression change significantly different than zero at a time point?
- p>0.05 5%
- probability that you would have seen at least this big of a change by chance.
- ANOVA: is the gene expression significantly different than zero at any time point?
- Values below 0.25 should be considered to be a gene with no change in expression
