Difference between revisions of "Msamdars Week 8"
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==Data & Files== | ==Data & Files== | ||
[[Media:DCIN5 MS Wk8.xlsx|Data file with corrections.]] | [[Media:DCIN5 MS Wk8.xlsx|Data file with corrections.]] | ||
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[[Media:DATA-POSTSANITY-STEM.zip|Zip file containing Excel sheet post-sanity check and STEM .txt file]] | [[Media:DATA-POSTSANITY-STEM.zip|Zip file containing Excel sheet post-sanity check and STEM .txt file]] | ||
Revision as of 15:07, 22 October 2019
Contents
Purpose
Methods/Results
- Strain: Saccharomyces cerevisiae - Δcin5 deletion strain
- My Filename: BIOL367_F19_dCIN5_MS.xlsx
- Replicates: 4 replicates for each timepoint
- Timepoints: t15, t30, t60, t90, t120
Data & Files
Zip file containing Excel sheet post-sanity check and STEM .txt file
Sanity Check
- How many genes have p < 0.05? and what is the percentage (out of 6189)?
- 2290 out of 6189 or 37.00% of the 6189 genes.
- How many genes have p < 0.01? and what is the percentage (out of 6189)?
- 1380 out of 6189 or 22.30% of the 6189 genes.
- How many genes have p < 0.001? and what is the percentage (out of 6189)?
- 691 out of 6189 or 11.16% of the 6189 genes.
- How many genes have p < 0.0001? and what is the percentage (out of 6189)?
- 358 out of 6189 or 5.784% of the 6189 genes.
- How many genes are p < 0.05 for the Bonferroni-corrected p value? and what is the percentage (out of 6189)?
- 151 out of 6189 or 2.440% of the 6189 genes.
- How many genes are p < 0.05 for the Benjamini and Hochberg-corrected p value? and what is the percentage (out of 6189)?
- 1453 out of 6189 or 23.48% of the 6189 genes.
Summary slide with statistics about microarray data.
Conclusion
Acknowledgments
This week my team members included Emma Young, Ivy-Quynh Macaraeg, & DeLisa Madere. We worked in class together.
Except for what is noted above, this individual journal entry was completed by me and not copied from another source.
Other Links
| Links | ||
|---|---|---|
| Mihir Samdarshi User Page | ||
| Assignment Pages | Personal Journal Entries | Shared Journal Entries |
| Week 1 | Journal Week 1 | Class Journal Week 1 |
| Week 2 | Journal Week 2 | Class Journal Week 2 |
| Week 3 | FAS2/YPL231W Week 3 | Class Journal Week 3 |
| Week 4 | Journal Week 4 | Class Journal Week 4 |
| Week 5 | Database - AmtDB | Class Journal Week 5 |
| Week 6 | Journal Week 6 | Class Journal Week 6 |
| Week 7 | Journal Week 7 | Class Journal Week 7 |
| Week 8 | Journal Week 8 | Class Journal Week 8 |
| Week 9 | Journal Week 9 | Class Journal Week 9 |
| Assignment Pages | Personal Journal Entries | |
| Week 10 | Journal Week 10 | |
| Week 11 | Journal Week 11 | |
| Week 12/13 | Journal Week 12/13 | |
| Team Project Links | ||
| Skinny Genes Team Page | ||
References
- LMU BioDB 2019. (2019). Week 8. Retrieved October 15, 2019, from https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_8
- MediaWiki (2019). Category: Help. Retrieved October 15, 2019, from https://www.mediawiki.org/wiki/Category:Help
