Difference between revisions of "Msamdars Week 8"
Jump to navigation
Jump to search
(→Data & Files: add SC) |
(→Sanity Check: add sanity check) |
||
| Line 12: | Line 12: | ||
===Sanity Check=== | ===Sanity Check=== | ||
| − | + | #How many genes have p < 0.05? and what is the percentage (out of 6189)? | |
| − | *How many genes have p < 0.01? and what is the percentage (out of 6189)? | + | #* 2290 out of 6189 or 37.00% of the 6189 genes. |
| − | *How many genes have p < 0.001? and what is the percentage (out of 6189)? | + | #How many genes have p < 0.01? and what is the percentage (out of 6189)? |
| − | *How many genes have p < 0.0001? and what is the percentage (out of 6189)? | + | #* 1380 out of 6189 or 22.30% of the 6189 genes. |
| + | #How many genes have p < 0.001? and what is the percentage (out of 6189)? | ||
| + | #* 691 out of 6189 or 11.16% of the 6189 genes. | ||
| + | #How many genes have p < 0.0001? and what is the percentage (out of 6189)? | ||
| + | #* 358 out of 6189 or 5.784% of the 6189 genes. | ||
| + | #How many genes are p < 0.05 for the Bonferroni-corrected p value? and what is the percentage (out of 6189)? | ||
| + | #* 151 out of 6189 or 2.440% of the 6189 genes. | ||
| + | #How many genes are p < 0.05 for the Benjamini and Hochberg-corrected p value? and what is the percentage (out of 6189)? | ||
| + | #* 1453 out of 6189 or 23.48% of the 6189 genes. | ||
==Conclusion== | ==Conclusion== | ||
Revision as of 14:34, 22 October 2019
Contents
Purpose
Methods/Results
- Strain: Saccharomyces cerevisiae - Δcin5 deletion strain
- My Filename: BIOL367_F19_dCIN5_MS.xlsx
- Replicates: 4 replicates for each timepoint
- Timepoints: t15, t30, t60, t90, t120
Data & Files
Sanity Check
- How many genes have p < 0.05? and what is the percentage (out of 6189)?
- 2290 out of 6189 or 37.00% of the 6189 genes.
- How many genes have p < 0.01? and what is the percentage (out of 6189)?
- 1380 out of 6189 or 22.30% of the 6189 genes.
- How many genes have p < 0.001? and what is the percentage (out of 6189)?
- 691 out of 6189 or 11.16% of the 6189 genes.
- How many genes have p < 0.0001? and what is the percentage (out of 6189)?
- 358 out of 6189 or 5.784% of the 6189 genes.
- How many genes are p < 0.05 for the Bonferroni-corrected p value? and what is the percentage (out of 6189)?
- 151 out of 6189 or 2.440% of the 6189 genes.
- How many genes are p < 0.05 for the Benjamini and Hochberg-corrected p value? and what is the percentage (out of 6189)?
- 1453 out of 6189 or 23.48% of the 6189 genes.
Conclusion
Acknowledgments
This week my team members included Emma Young, Ivy-Quynh Macaraeg, & DeLisa Madere. We worked in class together.
Except for what is noted above, this individual journal entry was completed by me and not copied from another source.
Other Links
| Links | ||
|---|---|---|
| Mihir Samdarshi User Page | ||
| Assignment Pages | Personal Journal Entries | Shared Journal Entries |
| Week 1 | Journal Week 1 | Class Journal Week 1 |
| Week 2 | Journal Week 2 | Class Journal Week 2 |
| Week 3 | FAS2/YPL231W Week 3 | Class Journal Week 3 |
| Week 4 | Journal Week 4 | Class Journal Week 4 |
| Week 5 | Database - AmtDB | Class Journal Week 5 |
| Week 6 | Journal Week 6 | Class Journal Week 6 |
| Week 7 | Journal Week 7 | Class Journal Week 7 |
| Week 8 | Journal Week 8 | Class Journal Week 8 |
| Week 9 | Journal Week 9 | Class Journal Week 9 |
| Assignment Pages | Personal Journal Entries | |
| Week 10 | Journal Week 10 | |
| Week 11 | Journal Week 11 | |
| Week 12/13 | Journal Week 12/13 | |
| Team Project Links | ||
| Skinny Genes Team Page | ||
References
- LMU BioDB 2019. (2019). Week 8. Retrieved October 15, 2019, from https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_8
- MediaWiki (2019). Category: Help. Retrieved October 15, 2019, from https://www.mediawiki.org/wiki/Category:Help
