Difference between revisions of "FunGals Deliverables"
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Revision as of 23:00, 12 December 2019
Contents
Information and Links
| FunGals Links | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| BIOL Databases Main Page | FunGals: Project Overview Page | Final Project Deliverables Requirements | FunGals: Final Project Deliverables | ||||||
| Assignment Pages | Week 11 | Week 12/13 | Week 15 | ||||||
User Pages
Knguye66 Marmas Icrespin Eyoung20
Template Page
Template:FunGals
Checklist
| Tasks to be completed | Complete/Incomplete |
|---|---|
| Organized Team deliverables wiki page (or other media (CD or flash drive) with table of contents) | Complete |
| Group Report (.doc, .docx or .pdf file) | Incomplete |
| Individual statements of work, assessments, reflections (wiki page, .doc, .docx, .pdf, or e-mailed to Dr. Dahlquist) | Incomplete |
| Group PowerPoint presentation (given on Tuesday, December 10, .ppt, .pptx or .pdf file) | Complete |
| Sample-data relationship table in Excel (.xlsx) | Complete |
| Excel spreadsheet with ANOVA results/stem formatting (.xlsx) | Complete |
| PowerPoint of ANOVA table, screenshots of stem results (.pptx), screenshot of black and white GRNsight input network and colored GRNsight output networks | Incomplete |
| Gene List and GO List files from each significant profile (.txt compressed together in a .zip file) | Complete |
| YEASTRACT "rank by TF" results (.xlsx) | Complete |
| GRNmap input workbook (with network adjacency matrix, .xlsx) | Complete |
| GRNmap output workbook (.xlsx) and output plots (.jpg) zipped together | Complete |
| MS Access database, unified by the three teams with expression tables and metadata table(s) created (.accdb) | Complete |
| ReadMe for the database that describes the design of the database, references the sources of the data, and has a database schema diagram (.doc, .docx, .pdf) | Complete |
| Query design for populating a GRNmap input workbook from the database (screenshot of MS Access, or SQL code, .txt) | Incomplete |
| Electronic notebook corresponding to these the microarray results files (Week 12/13 and Week 15) to support reproducible research so that all manipulations of the data and files are documented so that someone else could begin with your starting file, follow the protocol, and obtain your results. | Incomplete |
Data and Files
- Group Report
- Group PowerPoint presentation
- Metadata Workbook
- ANOVA results/STEM formatting
- Figure Slides
- Gene List and GO List
- YEASTRACT "rank by TF" results
- GRNmap Input Workbooks
- GRNmap Output Workbooks
- MS Access Database
- ReadMe
- Query Design Screenshot
Individual Assessment and Reflection
Michael Armas
Statement of Work
- Describe exactly what you did on the project.
- Provide references or links to artifacts of your work, such as:
- Wiki pages
- Other files or documents
- Code or scripts
Assessment of Project
- Give an objective assessment of the success of your project workflow and teamwork.
- What worked and what didn't work?
- What would you do differently if you could do it all over again?
- Evaluate your team’s portion of the Final Project and Group Report in the following areas:
- Content: What is the quality of the work?
- Organization: Comment on the organization of the project and of your group's wiki pages.
- Completeness: Did your team achieve all of the project objectives? Why or why not?
Reflection on the Process
- What did you learn?
- With your head (biological or computer science principles)
- With your heart (personal qualities and teamwork qualities that make things work or not work)?
- With your hands (technical skills)?
- What lesson will you take away from this project that you will still use a year from now?
Kaitlyn Nguyen
Statement of Work
- Describe exactly what you did on the project.
- Provide references or links to artifacts of your work, such as:
- Wiki pages
- Other files or documents
- Code or scripts
Assessment of Project
- Give an objective assessment of the success of your project workflow and teamwork.
- What worked and what didn't work?
- What would you do differently if you could do it all over again?
- Evaluate your team’s portion of the Final Project and Group Report in the following areas:
- Content: What is the quality of the work?
- Organization: Comment on the organization of the project and of your group's wiki pages.
- Completeness: Did your team achieve all of the project objectives? Why or why not?
Reflection on the Process
- What did you learn?
- With your head (biological or computer science principles)
- With your heart (personal qualities and teamwork qualities that make things work or not work)?
- With your hands (technical skills)?
- What lesson will you take away from this project that you will still use a year from now?
Emma Young
Statement of Work
- Describe exactly what you did on the project.
- Provide references or links to artifacts of your work, such as:
- Wiki pages
- Other files or documents
- Code or scripts
Assessment of Project
- Give an objective assessment of the success of your project workflow and teamwork.
- What worked and what didn't work?
- What would you do differently if you could do it all over again?
- Evaluate your team’s portion of the Final Project and Group Report in the following areas:
- Content: What is the quality of the work?
- Organization: Comment on the organization of the project and of your group's wiki pages.
- Completeness: Did your team achieve all of the project objectives? Why or why not?
Reflection on the Process
- What did you learn?
- With your head (biological or computer science principles)
- With your heart (personal qualities and teamwork qualities that make things work or not work)?
- With your hands (technical skills)?
- What lesson will you take away from this project that you will still use a year from now?
Iliana Crespin
Individual Assessment and Reflection
Acknowledgments
This section is in acknowledgement to partners Michael Armas, Iliana Crespin, Emma Young, and Kaitlyn Nguyen.
Thank you Dr. Dahlquist for helping us on this project and being able to answer our questions. It was great having you as our professor this semester.
"Except for what is noted above, this individual journal entry was completed by me and not copied from another source."Icrespin (talk) 21:34, 12 December 2019 (PST)
References
Dahlquist, K. (2019, November 19). Week 12/13. In Wikipedia, Biological Databases. Retrieved 6:25, November 20, 2019, from https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_12/13
Dahlquist, K. (2019, October 17). Week 8. In Wikipedia, Biological Databases. Retrieved 6:30, October 21, 2019, from https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_8
Final Project. (2019). Deliverables. Retrieved December 10, 2019 from https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Final_Project_Deliverables
FunGals. (2019). Home Page. Retrieved December 12, 2019 from https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/FunGals
Kitagawa, E., Takahashi, J., Momose, Y., & Iwahashi, H. (2002). Effects of the pesticide thiuram: genome-wide screening of indicator genes by yeast DNA microarray. Environmental science & technology, 36(18), 3908-3915. DOI: 10.1021/es015705v
