Msamdars Week 11
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Contents
- 1 Purpose
- 2 Ten Definitions
- 3 Journal Article Outline
- 3.1 What is the main result presented in this paper?
- 3.2 What is the importance or significance of this work?
- 3.3 What were the limitations in previous studies that led them to perform this work?
- 3.4 How did they treat the yeast cells (what experiment were they doing?)
- 3.5 What strain(s) of yeast did they use? Were the strain(s) haploid or diploid?
- 3.6 What media did they grow them in? What temperature? What type of incubator? For how long?
- 3.7 What controls did they use?
- 3.8 How many replicates did they perform per treatment or timepoint?
- 3.9 What method did they use to prepare the RNA, label it and hybridize it to the microarray?
- 3.10 What mathematical/statistical method did they use to analyze the data?
- 3.11 Are the data publicly available for download? From which web site?
- 3.12 Briefly state the result shown in each of the figures and tables, not just the ones you are presenting.
- 3.13 How does this work compare with previous studies?
- 3.14 What are the important implications of this work?
- 3.15 What future directions should the authors take?
- 3.16 Give a critical evaluation of how well you think the authors supported their conclusions with the data they showed. Are there any major flaws to the paper?
- 4 Annotated Bibliography
- 5 Data & Files
- 6 Conclusion
- 7 Acknowledgments
- 8 Other Links
- 9 References
Purpose
Ten Definitions
Journal Article Outline
What is the main result presented in this paper?
What is the importance or significance of this work?
What were the limitations in previous studies that led them to perform this work?
How did they treat the yeast cells (what experiment were they doing?)
What strain(s) of yeast did they use? Were the strain(s) haploid or diploid?
What media did they grow them in? What temperature? What type of incubator? For how long?
What controls did they use?
How many replicates did they perform per treatment or timepoint?
What method did they use to prepare the RNA, label it and hybridize it to the microarray?
What mathematical/statistical method did they use to analyze the data?
Are the data publicly available for download? From which web site?
Briefly state the result shown in each of the figures and tables, not just the ones you are presenting.
- What do the X and Y axes represent?
- How were the measurements made?
- What trends are shown by the plots and what conclusions can you draw from the data?
How does this work compare with previous studies?
What are the important implications of this work?
What future directions should the authors take?
Give a critical evaluation of how well you think the authors supported their conclusions with the data they showed. Are there any major flaws to the paper?
Annotated Bibliography
Data & Files
Conclusion
Acknowledgments
This week my team members are in Skinny Genes which is composed of Jonar Cowan, Aby Mesfin, David Ramirez, Christina Dominguez, & myself. We worked in and out of class together.
Except for what is noted above, this individual journal entry was completed by me and not copied from another source.
Other Links
| Links | ||
|---|---|---|
| Mihir Samdarshi User Page | ||
| Assignment Pages | Personal Journal Entries | Shared Journal Entries |
| Week 1 | Journal Week 1 | Class Journal Week 1 |
| Week 2 | Journal Week 2 | Class Journal Week 2 |
| Week 3 | FAS2/YPL231W Week 3 | Class Journal Week 3 |
| Week 4 | Journal Week 4 | Class Journal Week 4 |
| Week 5 | Database - AmtDB | Class Journal Week 5 |
| Week 6 | Journal Week 6 | Class Journal Week 6 |
| Week 7 | Journal Week 7 | Class Journal Week 7 |
| Week 8 | Journal Week 8 | Class Journal Week 8 |
| Week 9 | Journal Week 9 | Class Journal Week 9 |
| Assignment Pages | Personal Journal Entries | |
| Week 10 | Journal Week 10 | |
| Week 11 | Journal Week 11 | |
| Week 12/13 | Journal Week 12/13 | |
| Team Project Links | ||
| Skinny Genes Team Page | ||
References
- LMU BioDB 2019. (2019). Week 11. Retrieved November 7, 2019, from https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_11
- MediaWiki (2019). Category: Help. Retrieved November 7, 2019, from https://www.mediawiki.org/wiki/Category:Help
