Cdomin12 Week 12/13

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template: cdomin12

Assignment Page	Individual Journal Entries	Class Journal
Week 1	cdomin12 Week 1	Class Journal Week 1
Week 2	cdomin12 Week 2	Class Journal Week 2
Week 3	RAD53 / YPL153C Week 3	Class Journal Week 3
Week 4	cdomin12 Week 4	Class Journal Week 4
Week 5	IMG/VR Week 5	Class Journal Week 5
Week 6	cdomin12 Week 6	Class Journal Week 6
Week 7	cdomin12 Week 7	Class Journal Week 7
Week 8	cdomin12 Week 8	Class Journal Week 8
Week 9	cdomin12 Week 9	Class Journal Week 9
Week 10	cdomin12 Week 10	Class Journal Week 10
Week 11	cdomin12 Week 11	Skinny Genes
Week 12/13	Skinny Genes Quality Assurance	Skinny Genes
Week 15	Skinny Genes Deliverables	Skinny Genes

Annotated Bibliography

• 1. Use a keyword search for the first three databases/tools and answer the following:
     • PubMed
       • What original keyword(s) did you use? How many results did you get? "potassium starvation" which got 521 results
       • Which terms in which combinations were most useful to narrow down the search? How many results did you get after narrowing the search? "potassium starvation" and "yeast" gave 31 results
     • Google Scholar
       • What original keyword(s) did you use? How many results did you get? "potassium starvation" gave 133,000 results
       • Which terms in which combinations were most useful to narrow down the search? How many results did you get after narrowing the search? By doing an advanced search of "potassium starvation" and "yeast" gave 4,560 results
     • Web of Science
       • What original keyword(s) did you use? How many results did you get? "potassium starvation" which gave 427 results
       • Which terms in which combinations were most useful to narrow down the search? How many results did you get after narrowing the search? "potassium starvation" and "yeast" gave 60 results
  2. Use the advanced search functions for each of these three databases/tools and answer the following:
     • PubMed
       • Which advanced search functions were most useful to narrow down the search? How many results did you get? 31 results with "potassium starvation" in title/abstract search
     • Google Scholar
       • Which advanced search functions were most useful to narrow down the search? How many results did you get? I used "since 2018" to sort more recent studies which gave 9,520 results.
     • Web of Science
       • Which advanced search functions were most useful to narrow down the search? How many results did you get? searching "potassium starvation" in abstract yielded 27 results.
     • Perform a prospective search on your article in the Web of Science and answer the following:
       • How many articles does this article cite? 41 articles
       • How many articles cite this article? 13 articles

Bibliographic Entries

1. Anemaet, I. G., & van Heusden, G. P. H. (2014). Transcriptional response of Saccharomyces cerevisiae to potassium starvation. BMC genomics, 15(1), 1040. doi:10.1186/1471-2164-15-1040
2. PubMed Abstract: https://www.ncbi.nlm.nih.gov/pubmed/25432801
3. PubMed Central: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4289377/
4. Publisher Full Text (HTML): http://sq4ya5rf2q.search.serialssolutions.com/?V=1.0&sid=PubMed:LinkOut&pmid=25432801
5. Publisher Full Text (PDF): https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4289377/pdf/12864_2014_Article_6863.pdf
6. Copyright: BioMed Central. This is an Open Access article.
7. Availability: online
8. Publisher: BioMedCentral, for profit, not a member of the OAPA, in United Kingdom
9. The journal began in 2000
10. Peer-reviewed articles: yes
11. https://bmcbiol.biomedcentral.com/about/editorial-board
12. Impact factor: 7.98
13. Primary research article
14. [1] at bottom of page titled "electronic supplementary material"

1. Schade, B., Jansen, G., Whiteway, M., Entian, K.D., & Thomas, D.Y. (2004). Cold Adaptation in Budding Yeast. Molecular Biology of the Cell, 15, 5492-5502. doi: 10.1091/mbc.E04-03-0167
2. PubMed Abstract: http://www.ncbi.nlm.nih.gov/pubmed/15483057
3. PubMed Central: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC532028/
4. Publisher Full Text (HTML): http://www.molbiolcell.org/content/15/12/5492.long
5. Publisher Full Text (PDF): http://www.molbiolcell.org/content/15/12/5492.full.pdf+html
6. Copyright: 2004 by the American Society for Cell Biology (information found on PDF version of article);
7. Article is not Open Access, but is freely available 2 months after publication, published in the United States, LMU did not pay for the article
8. Availability: in print and online
9. Publisher: American Society for Cell Biology (scientific society), non-profit, not a member of the OAPA
10. The journal begain in 1989
11. Peer-reviewed articles: yest
12. Editorial board.
13. Impact factor: 3.512 (2017)
14. Primary research article

Reflect

2.What are the advantages and disadvantages of each of the three databases (Pubmed, Google Scholar, Web of Science)?

• Google Scholar: Disadvantages include limited capability of narrowing down search and not including DOI number in citations. Advantages include formatted citations and a familiar interface that is user friendly.
• Pubmed: Disadvantages include keywords allowing for specific filters that can limit what is presented as a result. Advantages include a more detailed query for narrowing down searches.
• Web of Science: Disadvantages include less up to date results and less relevance in results. Advantages include all articles related to sciences which allows for more diverse results and a university resource. They also have a citation network that allows for connections to all papers referenced.