Ckaplan Week 15
File:Yeast Beasts Presentation.pdf
The week 14 and 15 reflections will be combined, as advised by Dr. Dahlquist. This is because of the wiki being intermittently down during week 14.
See our data analyst week 14 progress here: Data Analysts Week 14
See our data analyst week 15 progress here: Data Analysts Week 15
Contents
Charlotte's Reflection Week 14/15:
Katherine Miller and I, being the data analysts, worked with Quality Assurance Hailey Ivanson to complete Milestone 3 and Milestone 4 in person for week 14. Katherine Miller Hailey Ivanson and I to complete Milestone 2 and Milestone 3 in person. We created our ANOVA sheet and calculated the Bonferroni and B&H values, obtaining our needed p-values, and we also performed a sanity check. We then created a CHP_STEM file to filter the correct BH values to p>0.05, getting rid of any div errors. We saved this as a text file and proceeded to work on our GO and Gene tables. We found 7 significant profiles within profile 41. We had issues creating the queries for Miestone 5, so Dean Symonds assisted us in creating the queries needed to run GRNmap. What worked since we had experience from previous assignments, creating our CHP_stem file, filtering p-values, and choosing our transcription factors did not raise too many questions. What we struggled with was creating the queries needed for Dr. Dahlquist to run the GRNmap. Without Dean's help, we could not have done this on our own. To fix what we had issues with, it would have been easier if all six of us could meet at the same time, although it is understandable due to varying schedules.
Ckapla12 (talk) 19:21, 2 May 2024 (PDT)
Acknowledgements
This procedure was adapted from the Data Analysis page Milestone 3 and 4 protocol, linked here: Data Analysis The procedure for Milestone 3 was also adapted from the steps outlined in the Week 9 assignment page. The procedure for Milestone 4 was also adapted from the steps outlined in the Week 10 assignment page. For Milestone 5, we followed the procedure listed on Data Analysis. Our quality assurance, Hailey Ivanson was a key part in completing these milestones, and her help was very valuable. Dean Symonds assisted us in creating an input workbook for GRNmap using queries to the Microsoft Access database created by the Coders/Designers.
References
LMU BioDB 2024. (2024). Week 14. Retrieved April 23, 2024 from https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Week_14
LMU BioDB 2024. (2024). Week 15. Retrieved May 2, 2024 from https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Week_15
LMU BioDB 2024. (2024). Week 9. Retrieved April 23, 2024 from https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Week_9
LMU BioDB 2024. (2024). Week 10. Retrieved April 23, 2024 from https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Week_10
LMU BioDB 2024. (2024). Data Analysis. Retrieved April 23, 2024 from https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Data_Analysis
Team Pages
Role Pages
Ckapla12 (talk) 19:12, 2 May 2024 (PDT)
Assignment Pages
- Week 1
- Week 2
- Week 3
- Week 4
- Week 5
- Week 6
- Week 8
- Week 9
- Week 10
- Week 11
- Week 12
- Week 13
- Week 14
- Week 15
Individual Journal Entry Pages
- ckaplan Week 1
- ckaplan Week 2
- SIR2 Week 3
- AgeAnnoMO Week 4
- ckaplan Week 5
- ckaplan Week 6
- ckaplan Week 8
- ckaplan Week 9
- ckaplan Week 10
- ckaplan Week 11
- ckaplan Week 12
- ckaplan Week 13
- ckaplan Week 14
- ckaplan Week 15
