Icrespin Journal Week 12/13

From LMU BioDB 2019
Jump to navigation Jump to search

Electronic Lab Notebook

Icrespin User Page

Assignment Page Individual Journal Entry Shared Journal Entry
Week 1 Icrespin Journal Week 1 Class Journal Week 1
Week 2 Icrespin Journal Week 2 Class Journal Week 2
Week 3 ILT1/YDR090C Week 3 Class Journal Week 3
Week 4 Icrespin Journal Week 4 Class Journal Week 4
Week 5 RNAct Week 5 Class Journal Week 5
Week 6 Icrespin Journal Week 6 Class Journal Week 6
Week 7 Icrespin Journal Week 7 Class Journal Week 7
Week 8 Icrespin Journal Week 8 Class Journal Week 8
Week 9 Icrespin Journal Week 9 Class Journal Week 9
Week 10 Icrespin Journal Week 10 Class Journal Week 10
Week 11 Icrespin Journal Week 11 FunGals
Week 12/13 Icrespin Journal Week 12/13 FunGals
Week 15 Icrespin Journal Week 15 FunGals

Purpose

The purpose of this week's assignment is to discuss the progress that has been done. Roles for each team member would be explained a bit more and the goals of completing certain tasks would be completed for this week. These tasks include finalizing the data analysis portion. As a QA, the major task is making sure the data analysts are doing okay and to help out as much as possible.

Methods/Results: In Progress

November 21, 2019

  • For this week, our group decided to complete some of our milestones and deliverables by Thursday's date.
  • Reviewed the work that the data analysts did to make sure there weren't any errors that were made.
    • Thanks to a great team, data analysts caught some things as well that were wrong.
  • Made sure the metadata was up to date and asked to have few things clarified.
  • Reminded to write summaries down for group's assignment.

November 26, 2019

  • Double checked the work of the data analysts again to see if things look okay.
  • Added more things to the template
    • Created more links that follow deliverables' requirements
    • Copied and pasted questions that will be answered in the future from Dahlquist's weekly assignments
    • Checked to see group's page is up to date.

Milestones

Milestones Due Date Complete/Incomplete
Annotated Bibliography
  • Work on creating a bibliography with other team members
Tuesday, 12:00am, 11/12/19 COMPLETE
Journal Club Presentation
  • Review article and ask any questions that seemed unclear
  • Add important slides to powerpoint
  • Practice what will be presented to audience
Thursday, 12:00am, 11/14/19 COMPLETE
Working with Data Analysts to Understand Microarray Dataset
  • Review and double check work done by data analysts
  • Complete sanity checks to make sure it matches with work
  • Add any information needed to make sure everything is fine
Tuesday, 12:00am, 11/26/19 COMPLETE
Making Sure Expression Data has Both Sytematic Name and Standard Name ID's
  • Review information to make sure this is complete
Tuesday, 12:00am, 11/26/19 COMPLETE
Work with Coder/Designers to Design a Database to Store Time-course Microarray Data from Four Sources
  • Add database to Box folder
  • Work with Coder to create MS Access database to store yeast time-course microarray
  • Review information and determine headings for database
Tuesday, 12:00am, 12/03/19 INCOMPLETE
Validation and Quality Assurance on Database
  • Review information to make sure it is correct
  • Communicate with Coder if something is wrong/missing
Thursday, 12:00am, 12/06/19 INCOMPLETE
Final Documentation
  • Review database schema diagram with Coder
Thursday, 12:00am, 12/06/19 INCOMPLETE
Final Presentation Tuesday, 12:00am, 12/10/19 INCOMPLETE
Report submitted Friday, 4:00 pm, 12/13/19 INCOMPLETE

Data and Files

Metadata Sheet

Thiuram Excel Workbook

Conclusion

Overall, it has been a bit difficult to contribute to the group because there isn't much a QA can do in the first few stages of this project. However, in the background, there have been reviewing and making sure things are being submitted on time. More messages will be sent out to group members to make sure things are being submitted on time so everyone can get the points they deserve. For the next week, the plan is to continue hitting the milestones and completing the checklist for the group's deliverables.

Acknowledgments

  • Thank you to Kaitlyn Nguyen, Emma Young, and Michael Armas for being great team members. The Excel workbook was copied and pasted from our shared link, whereas the metadata was copied and pasted from Michael's page.
  • Thanks to Dr. Dahlquist for checking our work making sure it is being done properly.
  • Thanks to other team/guild members for having the metadata formatted and prepared.
  • "Except for what is noted above, this individual journal entry was completed by me and not copied from another source."Icrespin (talk) 19:47, 25 November 2019 (PST)

References

Final Project. (2019). Deliverables. Retrieved November 25, 2019 from https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Final_Project_Deliverables

LMU BioDB 2019. (2019). Week 12/13. Retrieved November 21, 2019, from https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_12/13

Michael Armas. (2019). User's Week 12/13. Retrieved November 25, 2019 from https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Marmas_Week_12/13

Quality Assurance. (2019). Quality Assurance Main Page. Retrieved November 21, 2019, from https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Quality_Assurance