Difference between revisions of "Gene hAPI Deliverables"
From LMU BioDB 2017
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[[Gene hAPI]] | [[Gene hAPI]] | ||
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| + | Members: | ||
| + | *[[User:Cazinge|Eddie Azinge]] | ||
| + | *[[User:Dbashour|Dina Bashoura]] | ||
| + | *[[User:Johnllopez616|John Lopez]] | ||
| + | *[[User:Cwong34|Corinne Wong]] | ||
= Gene hAPI Deliverables = | = Gene hAPI Deliverables = | ||
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#* [[Gene_hAPI_Deliverables|Gene hAPI Deliverables page (this current page)]] | #* [[Gene_hAPI_Deliverables|Gene hAPI Deliverables page (this current page)]] | ||
# Group report | # Group report | ||
| − | #* | + | #* [[Media:Gene_hAPI_Group_Report.pdf | Final Group Report]] |
# Individual statements | # Individual statements | ||
| − | #* Eddie A.: | + | #* Eddie A.: [[Cazinge_Final_Reflection | Eddie's Individual Statement]] |
| − | #* Dina: | + | #* Dina: [[Dbashour_Final_Reflection | Dina's Individual Statement]] |
| − | #* John: | + | #* John: [[Johnllopez616_Individual_Statement|John's Individual Statement]] |
| − | #* Corinne:[[Cwong34_Individual_Statement|Corinne's individual statement]] | + | #* Corinne: [[Cwong34_Individual_Statement|Corinne's individual statement]] |
# Group PowerPoint presentation | # Group PowerPoint presentation | ||
#* [[Media:Gene_hAPI_Final_Presentation.pptx | Gene hAPI final presentation]] | #* [[Media:Gene_hAPI_Final_Presentation.pptx | Gene hAPI final presentation]] | ||
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#* [[Media:Cold_Shock_Yeast_Genome_Response.pdf | QA/Data Analyst Journal Club Presentation]] | #* [[Media:Cold_Shock_Yeast_Genome_Response.pdf | QA/Data Analyst Journal Club Presentation]] | ||
# Code (GitHub pull request) | # Code (GitHub pull request) | ||
| − | #* | + | #* [https://github.com/bhamilton18/GRNsight Github] |
# README | # README | ||
| − | #* | + | #* [[Media:GetGeneInformationREADME.txt | getGeneInformation() Readme]] |
# Excel spreadsheet with ANOVA results/stem formatting | # Excel spreadsheet with ANOVA results/stem formatting | ||
| − | #* | + | #*[[Media:DGLN3_ANOVA_DB.xlsx | DGLN3 ANOVA/Stem]] |
# PowerPoint of screenshots of stem results | # PowerPoint of screenshots of stem results | ||
| − | #* | + | #*[[Media:DGLN3_ppt_Dina.pptx | DGLN3 ppt Dina]] |
# Gene List and GO List files from each significant profile | # Gene List and GO List files from each significant profile | ||
| − | #* | + | #*[[Media:Gene_List_GO_List_DB.zip | DGLN3 Gene List and GO list]] |
# YEASTRACT "rank by TF" results | # YEASTRACT "rank by TF" results | ||
| − | #* | + | #*[[Media:Yeastract_results_TF_DB_Gene_hAPI.xlsx | Yeastract TF List]] |
# GRNmap input workbook (with network adjency matrix) | # GRNmap input workbook (with network adjency matrix) | ||
| − | #* | + | #*[[Media:GRNmap_dGLN3_input.xlsx | GRNmap dGLN3 input]] |
# GRNmap output workbook | # GRNmap output workbook | ||
| − | #* | + | #*[[Media:15-genes_32-edges_team-hAPI_Sigmoid_estimation_output.xlsx | GRNmap dGLN3 output]] |
# Electronic notebooks | # Electronic notebooks | ||
#* [[Dbashour_Week_8|Dina's Week 8]] | #* [[Dbashour_Week_8|Dina's Week 8]] | ||
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#* [[Dbashour_Week_14|Dina's Week 14]] | #* [[Dbashour_Week_14|Dina's Week 14]] | ||
#* [[Dbashour_Week_15|Dina's Week 15]] | #* [[Dbashour_Week_15|Dina's Week 15]] | ||
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| − | |||
= Deliverables Checklist = | = Deliverables Checklist = | ||
Latest revision as of 00:33, 16 December 2017
Members:
Gene hAPI Deliverables
- Organized team deliverables wiki page
- Group report
- Individual statements
- Eddie A.: Eddie's Individual Statement
- Dina: Dina's Individual Statement
- John: John's Individual Statement
- Corinne: Corinne's individual statement
- Group PowerPoint presentation
- Code (GitHub pull request)
- README
- Excel spreadsheet with ANOVA results/stem formatting
- PowerPoint of screenshots of stem results
- Gene List and GO List files from each significant profile
- YEASTRACT "rank by TF" results
- GRNmap input workbook (with network adjency matrix)
- GRNmap output workbook
- Electronic notebooks
Deliverables Checklist
- Organized Team deliverables wiki page (or other media (CD or flash drive) with table of contents)
- Group Report (.doc, .docx or .pdf file)
- Individual statements of work, assessments, reflections (wiki page, .doc, .docx, .pdf, or e-mailed to both Dr. Dahlquist and Dr. Dionisio)
- Group PowerPoint presentation (given on Tuesday, December 12, .ppt, .pptx or .pdf file)
- Code (GitHub pull request)
- Each team should coordinate in performing a final integration and integration testing iteration (see Coder milestone for details) which the Interaction and Integration team then submits to the original GRNsight GitHub repository as a single, unified pull request from the class project’s fork
- Supply a README that summarizes the functionality of your team's new feature (.txt or .md, one README per team)
- Excel spreadsheet with ANOVA results/stem formatting (.xlsx)
- PowerPoint of screenshots of stem results (.pptx)
- Gene List and GO List files from each significant profile (.txt compressed together in a .zip file)
- YEASTRACT "rank by TF" results (.xlsx)
- GRNmap input workbook (with network adjacency matrix, .xlsx)
- GRNmap output workbook (.xlsx)
- Electronic notebook corresponding to these the microarray results files (Week 8, Week 10, and Weeks 11-15) support reproducible research so that all manipulations of the data and files are documented so that someone else could begin with your starting file, follow the protocol, and obtain your results.
Group Report Update
- 1-2 page introduction
- Methods
- Data analyst
- QA
- Coders
- Combine results/discussion - add few sentences about significance after each result
- DA
- QA
- Coders
- Conclusion 1-2 pages
- Connect to JC papers
- Future direction
- Summary
